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e53c39bb8b
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2008-10-09 08:47:41 +00:00 |
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9734a0dc71
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2008-10-08 14:59:50 +00:00 |
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dcc7588e37
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* use obitools/obo/go/parser.py, a specific OBO Go parser
* got from microbi implementation (FlatFile) ...
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2008-10-08 14:41:58 +00:00 |
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db529fac5f
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2008-10-08 13:58:09 +00:00 |
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df2c09d494
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specify the OBO parser to the GeneOntology OBO format
GOTerm inherits OBOTerm
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2008-10-08 08:34:07 +00:00 |
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cea1cb2fbb
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small bugs patches
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2008-10-07 13:50:12 +00:00 |
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004a5639d1
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_getNamespace in OBOTerm
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2008-10-07 11:01:48 +00:00 |
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bcbbaea78c
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a 'namespace' property in the OBO format
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2008-10-06 16:33:54 +00:00 |
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fa0636029a
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Parser OBO + contraintes GO - corrections de Sophie
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2008-10-05 10:43:11 +00:00 |
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4d4d53a37e
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* OBOTerm objects newly own 'namespace' and 'relationship' attributes
* API changed from 'replace_by' into 'replaced_by' OBOTerm attribute
* manage some None returns into getters
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2008-10-03 16:02:06 +00:00 |
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0d8dd86ace
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patch bug in ecotag for undefined taxon at a specific rank (line 217)
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2008-10-03 15:23:35 +00:00 |
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e9ce603cc3
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add taxonomic facilities to fastaGrep and fastaUniq utilities
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2008-10-03 14:59:19 +00:00 |
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6e89e28056
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force reading of sequences as nucleic sequences
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2008-10-03 08:05:09 +00:00 |
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33223ea5aa
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patch on bioseqEditTags
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2008-10-01 16:08:16 +00:00 |
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a89ab2481b
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remove old tools fastaAddTag and fastaRenameTag
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2008-10-01 15:35:45 +00:00 |
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46cb6e759a
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add fastaEditTag tool
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2008-10-01 15:33:00 +00:00 |
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2665d987a2
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Allow usage of iupac dna code in tagMatcher file reader
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2008-09-04 15:38:51 +00:00 |
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3106f29954
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2008-09-04 15:24:17 +00:00 |
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1fe95f889d
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script used to filter tagmatcher output file
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2008-09-02 14:07:13 +00:00 |
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0b9714ec7b
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Add reading and writing function for datafile in TagMatcher format
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2008-09-02 14:06:15 +00:00 |
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665cd722db
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add dnaparser sub module
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2008-07-25 14:54:27 +00:00 |
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b3d98ab717
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Add a writer for ecoPCRFile
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2008-07-11 06:13:40 +00:00 |
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a2966156dc
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2008-07-07 15:09:50 +00:00 |
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dc4ea3686a
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2008-07-07 15:09:29 +00:00 |
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83e9e31bf2
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Add embl reader
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2008-06-30 10:24:02 +00:00 |
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a22b9f8e0d
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refactor the fasta reader
add getGloc method to Location class
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2008-06-30 10:22:15 +00:00 |
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5391028ec8
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Patch bug in subseq
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2008-06-23 14:20:32 +00:00 |
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1f035b38bc
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2008-06-09 14:04:45 +00:00 |
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82cf928d87
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2008-06-09 14:03:45 +00:00 |
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6a8bacd693
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2008-06-09 14:03:08 +00:00 |
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54958ba992
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2008-06-09 14:02:54 +00:00 |
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dff5c86be8
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Bug correction on fastaGrep.py
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2008-06-02 10:19:34 +00:00 |
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d5fbfa6e50
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2008-06-02 10:02:43 +00:00 |
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0bf1761df6
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New script to preprocess CNS 454 file
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2008-06-02 10:01:57 +00:00 |
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976bf74dc2
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New script to split a fasta database in several files
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2008-06-02 10:00:57 +00:00 |
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4c47130328
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Add filtering option on subject coverage (-C)
Add option for printing sequence (-o)
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2008-06-02 09:59:10 +00:00 |
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b92032560c
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add begin and end attributes to locations
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2008-05-06 14:18:27 +00:00 |
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e775801a37
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remplace le print par un debug()
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2008-05-05 10:12:40 +00:00 |
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ba64835bcc
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Doc API
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2008-04-29 11:08:17 +00:00 |
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cba960a9d3
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Doc API
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2008-04-29 11:07:08 +00:00 |
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d090e11d12
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Add solexa reader
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2008-04-29 11:05:41 +00:00 |
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89ea37b559
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2008-04-28 07:50:13 +00:00 |
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251b88bf1e
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patch for negative shift
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2008-04-16 08:09:37 +00:00 |
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82e1778714
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New version of the api documentation
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2008-04-15 16:58:36 +00:00 |
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eabe06f11b
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modify option in epydoc
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2008-04-15 16:45:31 +00:00 |
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378ec0e472
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New version of the api documentation
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2008-04-15 16:44:44 +00:00 |
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83f38dfa22
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Correction of docstrings
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2008-04-15 16:42:42 +00:00 |
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142b1c2e0f
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fastaUniq uses uniqSequence method
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2008-04-15 16:20:11 +00:00 |
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740e23888a
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add ace2fasta.py script
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2008-04-15 16:19:07 +00:00 |
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225f0e795e
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Add new module to manage alignment <<preliminary version>>
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2008-04-15 16:18:10 +00:00 |
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