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0c792ac886
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Add a new version of freeendgapfullmatch with full match reward for partial matching
with IUPAC code
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2011-07-15 14:19:24 +00:00 |
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0ff107fb19
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Add a new version of freeendgapfullmatch with full match reward for partial matching
with IUPAC code
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2011-07-15 14:18:32 +00:00 |
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3eb15c4b88
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patch the tag file reading
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2011-07-15 12:51:07 +00:00 |
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2a9cd0ddcd
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add two files, ecoTaxSpecificityWithErr.py and ecoTaxSpecificityEx.py
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2011-06-26 15:13:07 +00:00 |
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01a1b7d801
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patch backtracking of reverse assemble
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2011-06-24 10:18:20 +00:00 |
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12e746f492
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Change the tag description file format. Tag can now be a single tag or a pair of tags separated by a colon.
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2011-06-18 06:05:22 +00:00 |
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850fac46e0
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2011-06-17 14:57:07 +00:00 |
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ea05affb10
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add categories attribute to determine uniqueness
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2011-06-16 20:42:38 +00:00 |
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253b76c3d3
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add categories attribute to determine uniqueness
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2011-06-16 20:36:50 +00:00 |
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5d1c12100c
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add categories attribute to determine uniqueness
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2011-06-16 20:33:59 +00:00 |
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450328a78d
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Asking for tags count to a sequence now always success and return 1 by default
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2011-06-16 20:24:43 +00:00 |
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0b29ecab80
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move the --rank option to the bioseqedittag option set
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2011-06-16 16:51:34 +00:00 |
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f66aaab769
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move the --rank option to the bioseqedittag option set
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2011-06-16 16:51:23 +00:00 |
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9bafa0ed19
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compute sum of count per category and print them as a new column named total
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2011-06-16 15:02:39 +00:00 |
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4133a16a6a
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completely new implementation of ngsfilter
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2011-06-15 21:34:04 +00:00 |
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b8d966c641
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simplify code according to the new progressBar feature
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2011-06-15 21:32:09 +00:00 |
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e5698e41b4
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add code to progressBar function to adjust automatically the refresh frequency
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2011-06-15 21:30:08 +00:00 |
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2270bb24f3
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Patch attributes reading in fastq file
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2011-06-14 12:12:24 +00:00 |
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280d2a1049
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Patch attributes reading in fastq file
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2011-06-14 12:12:02 +00:00 |
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14381847a2
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add taxonomy to the context of evaluation of arguments
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2011-05-10 12:14:35 +00:00 |
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ea119a5986
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add taxonomy to the context of evaluation of predicat
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2011-05-10 12:12:48 +00:00 |
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ea8a94f1f5
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add taxonomy to the context of evaluation of arguments
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2011-05-10 12:11:38 +00:00 |
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3876ac6bd6
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add taxonomy to the context of evaluation of predicat
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2011-05-10 12:07:05 +00:00 |
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d5d73c584b
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Patch management of of sequence annotation for WrappedBioseq
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2011-04-21 20:17:13 +00:00 |
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6f8c0acbb2
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Patch management of of sequence annotation for WrappedBioseq
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2011-04-21 20:00:09 +00:00 |
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423ebc56ea
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patch the bug in isLCSReachable
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2011-04-21 19:56:29 +00:00 |
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778cdaa50c
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work around a bug in isLCSReachable
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2011-04-20 19:09:28 +00:00 |
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cf9a55f499
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Patch management of of sequence annotation
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2011-04-15 05:22:29 +00:00 |
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f89cd09d03
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Patch management of of sequence annotation
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2011-04-15 05:21:06 +00:00 |
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8beee26e57
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Patch management of of sequence annotation
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2011-04-15 05:20:46 +00:00 |
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baad23d556
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Patch spelling of option names and descriptions
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2011-04-15 05:17:34 +00:00 |
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4ec636ab0f
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Add obiclean a new obitools
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2011-04-15 05:15:31 +00:00 |
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7d8ddcb161
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Patch on to obitools
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2011-04-15 05:14:36 +00:00 |
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f1f6489b10
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Some patch to ecoTag
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2011-04-11 14:29:14 +00:00 |
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929b2e40b0
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Patch "Direct Partiel" log
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2011-04-07 19:24:06 +00:00 |
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0c3900c0e1
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Patch reading of reference DB from a file
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2011-04-01 08:31:46 +00:00 |
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59be077f81
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tag version 0.2.200
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2011-03-29 11:17:06 +00:00 |
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178dd57e77
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patch the unmatched file opening
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2011-03-18 08:51:57 +00:00 |
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d531cf5914
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2011-03-15 12:11:27 +00:00 |
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821e8b219b
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Path loading of taxonomy
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2011-03-13 22:06:50 +00:00 |
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4e9e441dc6
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Path loading of taxonomy
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2011-03-13 22:06:05 +00:00 |
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5dfc4b969e
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2011-02-22 15:43:57 +00:00 |
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d96b8f9d9d
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first functional version of this profile nws algorithm
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2011-02-08 20:22:48 +00:00 |
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4ecde1f711
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Add a new class to represent DNA PSSM
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2011-02-07 08:56:08 +00:00 |
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d8fbaa4840
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patch vlen and hlen
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2011-02-07 08:55:18 +00:00 |
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225ce008db
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New implementation of the DynamicProgramation class
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2011-02-04 10:43:34 +00:00 |
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da0abda51f
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Add a new script obisort
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2011-02-03 21:01:13 +00:00 |
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7b6624e646
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source refactoring to remove obsolete import
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2011-02-03 18:53:39 +00:00 |
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85922a58e4
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2011-02-03 18:51:26 +00:00 |
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fab3224271
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2011-02-03 18:50:08 +00:00 |
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