147 lines
4.8 KiB
Plaintext
147 lines
4.8 KiB
Plaintext
digraph inout {
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Graph [rankdir=TB,overlap=scale]
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Node [shape="rectangle"];
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subgraph cluster_fasta {
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fasta [label="fasta\nsequence file",rank=1]
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fastanuc [label="nucleic fasta",rank=2];
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fastataxid [label="nucleic fasta\nwith taxid tag",rank=3];
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fastapep [label="peptidic fasta",rank=2];
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graph [rankdir=LR]
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fastataxid -> fastanuc
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fastapep -> fasta
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fastanuc -> fasta
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}
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fasta454 [label="nucleic fasta\n454 sequencer (fna)",rank=3];
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fastq [label="nucleic fastq\nwith quality"]
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genbank [label="nucleic genbank file"]
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embl [label="nucleic embl file"]
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taxdump [label="NCBI Taxonomy dump\ntaxdump directory"]
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ecopcrout [label="ecoPCR\nresult file"]
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ecopcrdb [shape="record" label="{<DB> ecoPCR DB | {<Tax> Taxonomy| <Seq> Sequences}}"]
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ecotagout [label="ecoTag.py\nresult file"]
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ecotagabsfile [label="ecoTag.py\nabstract file"]
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specificityrepport [label="taxonomy\nspecificity report"]
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taxstatrepport [label="taxonomy\nstatistic report"]
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rdataframe [label="R data frame\ntabular file"]
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node [shape="oval"];
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edge [arrowhead=open];
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convert2fasta [label="convert2fasta.py"]
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genbank -> convert2fasta [color=red]
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embl -> convert2fasta [color=red]
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fasta454 -> convert2fasta [color=red]
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convert2fasta -> fastanuc [color=green]
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ecopcr2fasta [label="ecopcr2fasta.py"]
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ecopcrout -> ecopcr2fasta [color=red]
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ecopcr2fasta -> fastanuc [color=green]
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ecotag [label="ecoTag.py"]
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fastanuc -> ecotag [color=red]
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ecopcrdb:Tax -> ecotag [color=pink,style=dotted,label="taxonomy"]
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fastataxid -> ecotag [color=pink,style=dotted,label="reference"]
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ecotag -> ecotagout [color=green]
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ecotagabstract [label="ecoTagAbstract.py"]
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ecotagout -> ecotagabstract [color=red]
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ecopcrdb -> ecotagabstract [color=pink,style=dotted,label="taxonomy"]
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ecotagabstract -> ecotagabsfile [color=green]
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ecotagmargeabstract [label="ecoTagMergeAbstract.py"]
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ecotagabsfile -> ecotagmargeabstract [color=red]
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ecotagabsfile -> ecotagmargeabstract [color=red]
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ecotagabsfile -> ecotagmargeabstract [color=red]
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ecotagmargeabstract -> rdataframe [color=green]
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ecotaxspecificity [label="ecoTaxSpecificity.py"]
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ecopcrout -> ecotaxspecificity [color=red]
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ecopcrdb -> ecotaxspecificity [decorate,color=pink,style=dashed,label="taxonomy"]
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ecotaxspecificity -> specificityrepport [color=green]
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ecotaxstat [label="ecoTaxStat.py"]
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ecopcrout -> ecotaxstat [color=red]
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ecopcrdb -> ecotaxstat [color=pink,style=dotted,label="taxonomy"]
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ecotaxstat -> taxstatrepport [color=green]
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fasta454filter [label="fasta454Filter.py"]
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fastanuc -> fasta454filter [color=red]
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fasta454filter -> fastanuc [color=green]
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fastacomplement [label="fastaComplement.py"]
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fastanuc -> fastacomplement [color=red]
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fastacomplement -> fastanuc [color=green]
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fastacut [label="fastaCut.py"]
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fasta -> fastacut [color=red]
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fastacut -> fasta [color=green]
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fastaannotate [label="fastaAnnotate.py"]
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fasta -> fastaannotate [color=red]
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fastaannotate -> fasta [color=green]
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fastagrep [label="fastaGrep.py"]
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fasta -> fastagrep [color=red]
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fastagrep -> fasta [color=green]
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fastalength [label="fastaLength.py"]
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fasta -> fastalength [color=red]
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fastalength -> fasta [color=green]
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fastasplit [label="fastaSplit.py"]
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fasta -> fastasplit [color=red]
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fastasplit -> fasta [color=green]
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fastasplit -> fasta [color=green]
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fastasplit -> fasta [color=green]
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fastauniq [label="fastaUniq.py"]
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fasta -> fastauniq [color=red]
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fastauniq -> fasta [color=green]
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ecopcrformat [label="ecoPCRFormat.py", URL="/trac/ecoPCR"]
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genbank -> ecopcrformat [color=red]
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embl -> ecopcrformat [color=red]
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fastataxid -> ecopcrformat [color=red]
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ecopcrformat -> ecopcrdb:DB [color=green]
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buildobitaxonomy [label="buildOBITaxonomy.py"]
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taxdump -> buildobitaxonomy [color=red]
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buildobitaxonomy -> ecopcrdb:Tax [color=green]
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ecopcr [label="ecoPCR", URL="/trac/ecoPCR"]
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ecopcrdb:DB -> ecopcr [color=red]
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ecopcr -> ecopcrout [color=green]
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} |