obitools

add _localtaxon attribute to the TaxonomyDump instance

2011-09-23 14:41:38 +00:00

ace2fasta.py

Add --upper-case option and a first version of obiselect

2010-07-07 00:13:30 +00:00

arbTaxonomy.py

2009-06-18 12:06:39 +00:00

convert2fasta.py

2011-02-22 15:43:57 +00:00

ecoDBTaxStat.py

2009-06-18 12:06:39 +00:00

ecoGraph.py

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

ecopcr2fasta.py

2010-05-20 14:33:36 +00:00

ecopcr2new.py

Add new script to convert old format ecoPCR result file to the new format with Tm

2010-01-22 14:39:14 +00:00

ecoTag.py

2011-06-17 14:57:07 +00:00

ecoTagAbstract.py

2009-05-13 22:08:05 +00:00

ecoTagMergeAbstract.py

Add two new scripts to analyse ecotag results

2008-10-21 16:16:57 +00:00

ecoTaxSpecificity.py

Added Errors and Quorum in ecoTaxSpecificity.py

2011-07-26 12:58:57 +00:00

ecoTaxStat.py

2009-05-13 22:08:05 +00:00

extractCDS.py

bug correction on parsing error

2008-03-12 15:44:38 +00:00

fasta2tab.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fasta454cdna.py

New obitools script to analyze cDNA 454 sequences

2009-09-18 17:05:05 +00:00

fasta454Filter.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaAddTaxid.py

patch syntax bug

2009-07-27 17:37:57 +00:00

fastaAnnotate.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaConcat.py

add new obitools script to concat all sequence of a file in one sequences

2010-01-22 13:26:44 +00:00

fastaCount.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaCut.py

remove extra import

2009-12-10 20:44:52 +00:00

fastaGrep.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaHead.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaKeys.py

2009-06-18 12:06:39 +00:00

fastaLength.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaLocate.py

2008-01-10 08:56:23 +00:00

fastaMergeTags.py

2008-01-10 08:56:23 +00:00

fastaObservedDist.py

2007-11-30 17:05:11 +00:00

fastaSample.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaSpecies.py

2009-05-13 22:08:05 +00:00

fastaSplit.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaStrand.py

2008-01-10 08:56:23 +00:00

fastaTail.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaTaxid.py

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

fastaTaxSample.py

2009-05-13 22:08:05 +00:00

fastaUniq.py

Add a deprecation warning on old version scripts indicating which scripts should

2010-05-10 11:40:25 +00:00

fastaWindows.py

add two new script for sequence statistics

2008-02-19 16:56:36 +00:00

fastaWordCount.py

Take into account the new word api

2010-04-29 13:20:54 +00:00

gr2ecoprimer.py

changed name of saved rawfiles to remove the gz extension

2009-09-18 14:24:42 +00:00

jwarcher2tab.py

2009-06-18 12:06:39 +00:00

ngsfilter.py

Consider partial match with IUPAC codes as full match for primer detection

2011-07-15 14:23:06 +00:00

obiannotate.py

Path loading of taxonomy

2011-03-13 22:06:50 +00:00

obiclean.py

2011-06-17 14:57:07 +00:00

obicomplement.py

2011-02-22 15:43:57 +00:00

obiconvert.py

2011-02-22 15:43:57 +00:00

obicount.py

Add automanagement of input and output format

2010-04-27 15:15:05 +00:00

obidistribute.py

Patch on to obitools

2011-04-15 05:14:36 +00:00

obigrep.py

2011-02-22 15:43:57 +00:00

obihead.py

2011-02-22 15:43:57 +00:00

obipcrerror.py

Patch on to obitools

2011-04-15 05:14:36 +00:00

obisample.py

2011-02-22 15:43:57 +00:00

obiselect.py

2011-02-22 15:43:57 +00:00

obisort.py

2011-02-22 15:43:57 +00:00

obisplit.py

2011-02-03 18:51:26 +00:00

obistat.py

patch error on count attribute (work around)

2011-09-05 13:49:21 +00:00

obitab.py

source refactoring to remove obsolete import

2011-02-03 18:53:39 +00:00

obitail.py

2011-02-22 15:43:57 +00:00

obitaxonomy.py

Add a capacity for taxonomy to manage extension to it through the notion of local taxa

2011-07-19 06:48:42 +00:00

obitools_test.py

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

obiuniq.py

add categories attribute to determine uniqueness

2011-06-16 20:36:50 +00:00

oligoTag.py

2009-10-14 13:48:12 +00:00

p5.dot

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

p5.pdf

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

rbcl.gene.fasta

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

solexaMerge.py

refactor the fasta reader

2008-06-30 10:22:15 +00:00

solexaPairEnd.py

Skip sequence of null length in solexaPairEnd

2011-08-29 14:53:36 +00:00

tagMatcher2tab.py

2008-09-04 15:24:17 +00:00

tagMatcherAnnotate.py

add fastaAddTaxid.py script

2009-03-19 21:59:08 +00:00

tagMatcherGrep.py

add fastaEditTag tool

2008-10-01 15:33:00 +00:00

taxonStat.py

2009-05-13 22:08:05 +00:00

titi

2011-02-22 15:43:57 +00:00

vaccumblaster.py

2008-02-19 17:52:06 +00:00