296 lines
12 KiB
HTML
296 lines
12 KiB
HTML
<?xml version="1.0" encoding="ascii"?>
|
|
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
"DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
|
<head>
|
|
<title>obitools.unit.obitools.AABioseqTest</title>
|
|
<link rel="stylesheet" href="epydoc.css" type="text/css" />
|
|
<script type="text/javascript" src="epydoc.js"></script>
|
|
</head>
|
|
|
|
<body bgcolor="white" text="black" link="blue" vlink="#204080"
|
|
alink="#204080">
|
|
<!-- ==================== NAVIGATION BAR ==================== -->
|
|
<table class="navbar" border="0" width="100%" cellpadding="0"
|
|
bgcolor="#a0c0ff" cellspacing="0">
|
|
<tr valign="middle">
|
|
<!-- Home link -->
|
|
<th> <a
|
|
href="obitools-module.html">Home</a> </th>
|
|
|
|
<!-- Tree link -->
|
|
<th> <a
|
|
href="module-tree.html">Trees</a> </th>
|
|
|
|
<!-- Index link -->
|
|
<th> <a
|
|
href="identifier-index.html">Indices</a> </th>
|
|
|
|
<!-- Help link -->
|
|
<th> <a
|
|
href="help.html">Help</a> </th>
|
|
|
|
<!-- Project homepage -->
|
|
<th class="navbar" align="right" width="100%">
|
|
<table border="0" cellpadding="0" cellspacing="0">
|
|
<tr><th class="navbar" align="center"
|
|
><a class="navbar" target="_top" href="http://www.grenoble.prabi.fr/trac/OBITools">OBITools</a></th>
|
|
</tr></table></th>
|
|
</tr>
|
|
</table>
|
|
<table width="100%" cellpadding="0" cellspacing="0">
|
|
<tr valign="top">
|
|
<td width="100%">
|
|
<span class="breadcrumbs">
|
|
<a href="obitools-module.html">Package obitools</a> ::
|
|
<a href="obitools.unit-module.html">Package unit</a> ::
|
|
<a href="obitools.unit.obitools-module.html">Package obitools</a> ::
|
|
Class AABioseqTest
|
|
</span>
|
|
</td>
|
|
<td>
|
|
<table cellpadding="0" cellspacing="0">
|
|
<!-- hide/show private -->
|
|
<tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
|
|
onclick="toggle_private();">hide private</a>]</span></td></tr>
|
|
<tr><td align="right"><span class="options"
|
|
>[<a href="frames.html" target="_top">frames</a
|
|
>] | <a href="obitools.unit.obitools.AABioseqTest-class.html"
|
|
target="_top">no frames</a>]</span></td></tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
<!-- ==================== CLASS DESCRIPTION ==================== -->
|
|
<h1 class="epydoc">Class AABioseqTest</h1><span class="codelink"><a href="obitools.unit.obitools-pysrc.html#AABioseqTest">source code</a></span><br /><br />
|
|
<center>
|
|
<center> <map id="class_hierarchy_for_aabioseqte" name="class_hierarchy_for_aabioseqte">
|
|
<area shape="rect" href="obitools.unit.obitools.AABioseqTest-class.html" title="AABioseqTest" alt="" coords="15,117,121,144"/>
|
|
<area shape="rect" href="obitools.unit.obitools.BioseqTest-class.html" title="BioseqTest" alt="" coords="24,61,112,88"/>
|
|
<area shape="rect" href="javascript: void(0);" title="unittest.TestCase" alt="" coords="5,5,131,32"/>
|
|
</map>
|
|
<img src="class_hierarchy_for_aabioseqte.gif" alt='' usemap="#class_hierarchy_for_aabioseqte" ismap="ismap" class="graph-without-title" />
|
|
</center></center>
|
|
<hr />
|
|
Test obitools.AASequence class<br /><br />
|
|
|
|
<!-- ==================== NESTED CLASSES ==================== -->
|
|
<a name="section-NestedClasses"></a>
|
|
<table class="summary" border="1" cellpadding="3"
|
|
cellspacing="0" width="100%" bgcolor="white">
|
|
<tr bgcolor="#70b0f0" class="table-header">
|
|
<td colspan="2" class="table-header">
|
|
<table border="0" cellpadding="0" cellspacing="0" width="100%">
|
|
<tr valign="top">
|
|
<td align="left"><span class="table-header">Nested Classes</span></td>
|
|
<td align="right" valign="top"
|
|
><span class="options">[<a href="#section-NestedClasses"
|
|
class="privatelink" onclick="toggle_private();"
|
|
>hide private</a>]</span></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<td width="15%" align="right" valign="top" class="summary">
|
|
<span class="summary-type"> </span>
|
|
</td><td class="summary">
|
|
<a href="obitools.AASequence-class.html" class="summary-name">bioseqClass</a>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<td colspan="2" class="summary">
|
|
<p class="indent-wrapped-lines"><b>Inherited from <code>unittest.TestCase</code></b>:
|
|
<code><a href="exceptions.AssertionError-class.html">failureException</a></code>
|
|
</p>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
<!-- ==================== INSTANCE METHODS ==================== -->
|
|
<a name="section-InstanceMethods"></a>
|
|
<table class="summary" border="1" cellpadding="3"
|
|
cellspacing="0" width="100%" bgcolor="white">
|
|
<tr bgcolor="#70b0f0" class="table-header">
|
|
<td colspan="2" class="table-header">
|
|
<table border="0" cellpadding="0" cellspacing="0" width="100%">
|
|
<tr valign="top">
|
|
<td align="left"><span class="table-header">Instance Methods</span></td>
|
|
<td align="right" valign="top"
|
|
><span class="options">[<a href="#section-InstanceMethods"
|
|
class="privatelink" onclick="toggle_private();"
|
|
>hide private</a>]</span></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<td colspan="2" class="summary">
|
|
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="obitools.unit.obitools.BioseqTest-class.html">BioseqTest</a></code></b>:
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#setUp">setUp</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#tearDown">tearDown</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#testCreateSequenceQualifier">testCreateSequenceQualifier</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#testDefinitionAttribute">testDefinitionAttribute</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#testIdAttribute">testIdAttribute</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#testIdValue">testIdValue</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#testSequenceIsLowerCase">testSequenceIsLowerCase</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#testSequenceQualifier">testSequenceQualifier</a></code>
|
|
</p>
|
|
<p class="indent-wrapped-lines"><b>Inherited from <code>unittest.TestCase</code></b>:
|
|
<code>__call__</code>,
|
|
<code>__init__</code>,
|
|
<code>__repr__</code>,
|
|
<code>__str__</code>,
|
|
<code>assertAlmostEqual</code>,
|
|
<code>assertAlmostEquals</code>,
|
|
<code>assertEqual</code>,
|
|
<code>assertEquals</code>,
|
|
<code>assertFalse</code>,
|
|
<code>assertNotAlmostEqual</code>,
|
|
<code>assertNotAlmostEquals</code>,
|
|
<code>assertNotEqual</code>,
|
|
<code>assertNotEquals</code>,
|
|
<code>assertRaises</code>,
|
|
<code>assertTrue</code>,
|
|
<code>assert_</code>,
|
|
<code>countTestCases</code>,
|
|
<code>debug</code>,
|
|
<code>defaultTestResult</code>,
|
|
<code>fail</code>,
|
|
<code>failIf</code>,
|
|
<code>failIfAlmostEqual</code>,
|
|
<code>failIfEqual</code>,
|
|
<code>failUnless</code>,
|
|
<code>failUnlessAlmostEqual</code>,
|
|
<code>failUnlessEqual</code>,
|
|
<code>failUnlessRaises</code>,
|
|
<code>id</code>,
|
|
<code>run</code>,
|
|
<code>shortDescription</code>
|
|
</p>
|
|
<div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code>unittest.TestCase</code></b> (private):
|
|
<code>_exc_info</code>
|
|
</p></div>
|
|
<p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
|
|
<code>__delattr__</code>,
|
|
<code>__getattribute__</code>,
|
|
<code>__hash__</code>,
|
|
<code>__new__</code>,
|
|
<code>__reduce__</code>,
|
|
<code>__reduce_ex__</code>,
|
|
<code>__setattr__</code>
|
|
</p>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
<!-- ==================== CLASS VARIABLES ==================== -->
|
|
<a name="section-ClassVariables"></a>
|
|
<table class="summary" border="1" cellpadding="3"
|
|
cellspacing="0" width="100%" bgcolor="white">
|
|
<tr bgcolor="#70b0f0" class="table-header">
|
|
<td colspan="2" class="table-header">
|
|
<table border="0" cellpadding="0" cellspacing="0" width="100%">
|
|
<tr valign="top">
|
|
<td align="left"><span class="table-header">Class Variables</span></td>
|
|
<td align="right" valign="top"
|
|
><span class="options">[<a href="#section-ClassVariables"
|
|
class="privatelink" onclick="toggle_private();"
|
|
>hide private</a>]</span></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<td width="15%" align="right" valign="top" class="summary">
|
|
<span class="summary-type"> </span>
|
|
</td><td class="summary">
|
|
<a name="sequenceString"></a><span class="summary-name">sequenceString</span> = <code title="'MLKCVTMLKCVTMLKCVTMLKCVTMLKCVT'"><code class="variable-quote">'</code><code class="variable-string">MLKCVTMLKCVTMLKCVTMLKCVTMLKCVT</code><code class="variable-quote">'</code></code>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<td colspan="2" class="summary">
|
|
<p class="indent-wrapped-lines"><b>Inherited from <code><a href="obitools.unit.obitools.BioseqTest-class.html">BioseqTest</a></code></b>:
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#sequenceDefinition">sequenceDefinition</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#sequenceId">sequenceId</a></code>,
|
|
<code><a href="obitools.unit.obitools.BioseqTest-class.html#sequenceQualifier">sequenceQualifier</a></code>
|
|
</p>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
<!-- ==================== PROPERTIES ==================== -->
|
|
<a name="section-Properties"></a>
|
|
<table class="summary" border="1" cellpadding="3"
|
|
cellspacing="0" width="100%" bgcolor="white">
|
|
<tr bgcolor="#70b0f0" class="table-header">
|
|
<td colspan="2" class="table-header">
|
|
<table border="0" cellpadding="0" cellspacing="0" width="100%">
|
|
<tr valign="top">
|
|
<td align="left"><span class="table-header">Properties</span></td>
|
|
<td align="right" valign="top"
|
|
><span class="options">[<a href="#section-Properties"
|
|
class="privatelink" onclick="toggle_private();"
|
|
>hide private</a>]</span></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<td colspan="2" class="summary">
|
|
<p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
|
|
<code>__class__</code>
|
|
</p>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
<!-- ==================== NAVIGATION BAR ==================== -->
|
|
<table class="navbar" border="0" width="100%" cellpadding="0"
|
|
bgcolor="#a0c0ff" cellspacing="0">
|
|
<tr valign="middle">
|
|
<!-- Home link -->
|
|
<th> <a
|
|
href="obitools-module.html">Home</a> </th>
|
|
|
|
<!-- Tree link -->
|
|
<th> <a
|
|
href="module-tree.html">Trees</a> </th>
|
|
|
|
<!-- Index link -->
|
|
<th> <a
|
|
href="identifier-index.html">Indices</a> </th>
|
|
|
|
<!-- Help link -->
|
|
<th> <a
|
|
href="help.html">Help</a> </th>
|
|
|
|
<!-- Project homepage -->
|
|
<th class="navbar" align="right" width="100%">
|
|
<table border="0" cellpadding="0" cellspacing="0">
|
|
<tr><th class="navbar" align="center"
|
|
><a class="navbar" target="_top" href="http://www.grenoble.prabi.fr/trac/OBITools">OBITools</a></th>
|
|
</tr></table></th>
|
|
</tr>
|
|
</table>
|
|
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
|
|
<tr>
|
|
<td align="left" class="footer">
|
|
<a href="epydoc-log.html">Generated by Epydoc
|
|
3.0beta1 on Tue Apr 29 13:03:52 2008</a>
|
|
</td>
|
|
<td align="right" class="footer">
|
|
<a href="http://epydoc.sourceforge.net">http://epydoc.sourceforge.net</a>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
|
|
<script type="text/javascript">
|
|
<!--
|
|
// Private objects are initially displayed (because if
|
|
// javascript is turned off then we want them to be
|
|
// visible); but by default, we want to hide them. So hide
|
|
// them unless we have a cookie that says to show them.
|
|
checkCookie()
|
|
// -->
|
|
</script>
|
|
|
|
</body>
|
|
</html>
|