125 lines
5.6 KiB
HTML
125 lines
5.6 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
||
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||
|
||
<html xmlns="http://www.w3.org/1999/xhtml">
|
||
<head>
|
||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||
|
||
<title>OBITools scripts — OBITools v0.1.3 documentation</title>
|
||
<link rel="stylesheet" href="_static/default.css" type="text/css" />
|
||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||
<script type="text/javascript">
|
||
var DOCUMENTATION_OPTIONS = {
|
||
URL_ROOT: '',
|
||
VERSION: '0.1.3',
|
||
COLLAPSE_MODINDEX: false,
|
||
FILE_SUFFIX: '.html',
|
||
HAS_SOURCE: true
|
||
};
|
||
</script>
|
||
<script type="text/javascript" src="_static/jquery.js"></script>
|
||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||
<link rel="top" title="OBITools v0.1.3 documentation" href="index.html" />
|
||
<link rel="next" title="File formats usable with OBITools" href="formats.html" />
|
||
<link rel="prev" title="Welcome to OBITools’s documentation!" href="index.html" />
|
||
</head>
|
||
<body>
|
||
<div class="related">
|
||
<h3>Navigation</h3>
|
||
<ul>
|
||
<li class="right" style="margin-right: 10px">
|
||
<a href="genindex.html" title="General Index"
|
||
accesskey="I">index</a></li>
|
||
<li class="right" >
|
||
<a href="formats.html" title="File formats usable with OBITools"
|
||
accesskey="N">next</a> |</li>
|
||
<li class="right" >
|
||
<a href="index.html" title="Welcome to OBITools’s documentation!"
|
||
accesskey="P">previous</a> |</li>
|
||
<li><a href="index.html">OBITools v0.1.3 documentation</a> »</li>
|
||
</ul>
|
||
</div>
|
||
|
||
<div class="document">
|
||
<div class="documentwrapper">
|
||
<div class="bodywrapper">
|
||
<div class="body">
|
||
|
||
<div class="section" id="obitools-scripts">
|
||
<h1>OBITools scripts<a class="headerlink" href="#obitools-scripts" title="Permalink to this headline">¶</a></h1>
|
||
<p>OBITools scripts are developed mainly for manipulating large sequence
|
||
files generated by the next generation sequencers.</p>
|
||
<p>Contents:</p>
|
||
<ul>
|
||
<li class="toctree-l1"><a class="reference external" href="formats.html">Usable file formats with OBITools</a><ul>
|
||
<li class="toctree-l2"><a class="reference external" href="formats.html#the-sequence-files">The sequence files</a></li>
|
||
<li class="toctree-l2"><a class="reference external" href="formats.html#the-taxonomy-files">The taxonomy files</a></li>
|
||
<li class="toctree-l2"><a class="reference external" href="formats.html#the-ecopcr-files">The ecoPCR files</a></li>
|
||
<li class="toctree-l2"><a class="reference external" href="formats.html#the-ecoprimer-files">The ecoPrimer files</a></li>
|
||
<li class="toctree-l2"><a class="reference external" href="formats.html#the-obitools-files">The OBITools files</a></li>
|
||
</ul>
|
||
</li>
|
||
<li class="toctree-l1"><a class="reference external" href="conversions.html">File format conversions</a><ul>
|
||
<li class="toctree-l2"><a class="reference external" href="conversions.html#convert-to-extended-obitools-fasta-format">Convert to extended OBITools fasta format</a></li>
|
||
<li class="toctree-l2"><a class="reference external" href="conversions.html#convert-taxonomic-data">Convert taxonomic data</a></li>
|
||
<li class="toctree-l2"><a class="reference external" href="conversions.html#convert-to-tabular-data-files">Convert to tabular data files</a></li>
|
||
</ul>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<div class="sphinxsidebar">
|
||
<div class="sphinxsidebarwrapper">
|
||
<h4>Previous topic</h4>
|
||
<p class="topless"><a href="index.html"
|
||
title="previous chapter">Welcome to OBITools’s documentation!</a></p>
|
||
<h4>Next topic</h4>
|
||
<p class="topless"><a href="formats.html"
|
||
title="next chapter">File formats usable with OBITools</a></p>
|
||
<h3>This Page</h3>
|
||
<ul class="this-page-menu">
|
||
<li><a href="_sources/scripts.txt"
|
||
rel="nofollow">Show Source</a></li>
|
||
</ul>
|
||
<div id="searchbox" style="display: none">
|
||
<h3>Quick search</h3>
|
||
<form class="search" action="search.html" method="get">
|
||
<input type="text" name="q" size="18" />
|
||
<input type="submit" value="Go" />
|
||
<input type="hidden" name="check_keywords" value="yes" />
|
||
<input type="hidden" name="area" value="default" />
|
||
</form>
|
||
<p class="searchtip" style="font-size: 90%">
|
||
Enter search terms or a module, class or function name.
|
||
</p>
|
||
</div>
|
||
<script type="text/javascript">$('#searchbox').show(0);</script>
|
||
</div>
|
||
</div>
|
||
<div class="clearer"></div>
|
||
</div>
|
||
<div class="related">
|
||
<h3>Navigation</h3>
|
||
<ul>
|
||
<li class="right" style="margin-right: 10px">
|
||
<a href="genindex.html" title="General Index"
|
||
>index</a></li>
|
||
<li class="right" >
|
||
<a href="formats.html" title="File formats usable with OBITools"
|
||
>next</a> |</li>
|
||
<li class="right" >
|
||
<a href="index.html" title="Welcome to OBITools’s documentation!"
|
||
>previous</a> |</li>
|
||
<li><a href="index.html">OBITools v0.1.3 documentation</a> »</li>
|
||
</ul>
|
||
</div>
|
||
<div class="footer">
|
||
© Copyright 2009, Eric Coissac.
|
||
Created using <a href="http://sphinx.pocoo.org/">Sphinx</a> 0.6.3.
|
||
</div>
|
||
</body>
|
||
</html> |