From 0eca86107e2223ed79becffde8a2d2e7b19c1c35 Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Wed, 27 Apr 2016 14:27:28 +0200
Subject: [PATCH] Pseudo obihead for tests

---
 python/obitools3/obihead.py | 43 +++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)
 create mode 100644 python/obitools3/obihead.py

diff --git a/python/obitools3/obihead.py b/python/obitools3/obihead.py
new file mode 100644
index 0000000..819d924
--- /dev/null
+++ b/python/obitools3/obihead.py
@@ -0,0 +1,43 @@
+import sys
+import argparse
+
+from obitools3.obidms._obidms import OBIDMS
+
+if __name__ == '__main__': 
+    
+    parser = argparse.ArgumentParser(description='Pseudo obihead.')
+    
+    parser.add_argument('-V', '--view', dest='view', type=str,
+                       help='Name of the view that should be considered')    
+
+    parser.add_argument('-N', '--new_view', dest='new_view', type=str,
+                       help='Name of the new view that should be created')    
+    
+    parser.add_argument('-n', '--nb', dest='nb_lines', type=int,
+                       help='Number of lines that should be taken')    
+    
+
+    args = parser.parse_args()
+    
+    d = OBIDMS('tdms')
+    
+    #condition = 1
+    line_selec = []
+    
+    v = d.open_view(args.view)
+    
+    for i in range(0, args.nb_lines) :
+        line_selec.append(i)
+        
+    new_v = d.new_view(args.new_view, view_to_clone=v, line_selection=line_selec, view_type="NUC_SEQS_VIEW", comments="obihead "+str(args.nb_lines)+", "+args.view+" to "+args.new_view) #args.key+" "+str(args.comparison)+" "+str(args.value)+" "+)
+
+    print("\n")
+    print(new_v.__repr__())
+
+    v.save_and_close()
+    new_v.save_and_close()
+    
+    d.close()
+
+    print("\nDone.")
+    
\ No newline at end of file