From 169b6514b4924221b087e77f99a2ea0d6589fcd0 Mon Sep 17 00:00:00 2001
From: MercierC <MercierC@host.docker.internal>
Date: Mon, 29 Mar 2021 13:07:48 +1300
Subject: [PATCH] small doc fixes

---
 python/obitools3/commands/addtaxids.pyx      | 2 +-
 python/obitools3/commands/align.pyx          | 2 +-
 python/obitools3/commands/alignpairedend.pyx | 2 +-
 python/obitools3/commands/build_ref_db.pyx   | 2 +-
 python/obitools3/commands/cat.pyx            | 2 +-
 python/obitools3/commands/count.pyx          | 2 +-
 python/obitools3/commands/head.pyx           | 2 +-
 python/obitools3/commands/import.pyx         | 2 +-
 python/obitools3/commands/ngsfilter.pyx      | 2 +-
 python/obitools3/commands/sort.pyx           | 2 +-
 python/obitools3/commands/stats.pyx          | 2 +-
 python/obitools3/commands/tail.pyx           | 2 +-
 python/obitools3/commands/test.pyx           | 2 +-
 13 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/python/obitools3/commands/addtaxids.pyx b/python/obitools3/commands/addtaxids.pyx
index 698c406..806c895 100755
--- a/python/obitools3/commands/addtaxids.pyx
+++ b/python/obitools3/commands/addtaxids.pyx
@@ -26,7 +26,7 @@ import sys
 from cpython.exc cimport PyErr_CheckSignals
 
  
-__title__="Annotate sequences with their corresponding NCBI taxid found from the taxon scientific name."
+__title__="Annotate sequences with their corresponding NCBI taxid found from the taxon scientific name"
 
 
  
diff --git a/python/obitools3/commands/align.pyx b/python/obitools3/commands/align.pyx
index 06ef8b2..20ca5de 100644
--- a/python/obitools3/commands/align.pyx
+++ b/python/obitools3/commands/align.pyx
@@ -19,7 +19,7 @@ import time
 import sys
 
 
-__title__="Aligns one sequence column with itself or two sequence columns"
+__title__="Align one sequence column with itself or two sequence columns"
 
 
 def addOptions(parser):
diff --git a/python/obitools3/commands/alignpairedend.pyx b/python/obitools3/commands/alignpairedend.pyx
index 5b5bd32..07c822c 100755
--- a/python/obitools3/commands/alignpairedend.pyx
+++ b/python/obitools3/commands/alignpairedend.pyx
@@ -23,7 +23,7 @@ import os
 
 from cpython.exc cimport PyErr_CheckSignals
 
-__title__="Aligns paired-ended reads"
+__title__="Align paired-ended reads"
 
 
 
diff --git a/python/obitools3/commands/build_ref_db.pyx b/python/obitools3/commands/build_ref_db.pyx
index d6f37c3..3c4074d 100755
--- a/python/obitools3/commands/build_ref_db.pyx
+++ b/python/obitools3/commands/build_ref_db.pyx
@@ -16,7 +16,7 @@ import sys
 from cpython.exc cimport PyErr_CheckSignals
 
 
-__title__="Tag a set of sequences for PCR and sequencing errors identification"
+__title__="Build a reference database for ecotag"
 
 
 def addOptions(parser):
diff --git a/python/obitools3/commands/cat.pyx b/python/obitools3/commands/cat.pyx
index 09175b2..a70839f 100755
--- a/python/obitools3/commands/cat.pyx
+++ b/python/obitools3/commands/cat.pyx
@@ -22,7 +22,7 @@ import sys
 from cpython.exc cimport PyErr_CheckSignals
 
 
-__title__="Concatenate views."
+__title__="Concatenate views"
 
  
 def addOptions(parser):
diff --git a/python/obitools3/commands/count.pyx b/python/obitools3/commands/count.pyx
index bd1ed18..f769a77 100755
--- a/python/obitools3/commands/count.pyx
+++ b/python/obitools3/commands/count.pyx
@@ -10,7 +10,7 @@ from obitools3.dms.capi.obiview cimport COUNT_COLUMN
 from cpython.exc cimport PyErr_CheckSignals
 
 
-__title__="Counts sequence records"
+__title__="Count sequence records"
 
  
 def addOptions(parser):
diff --git a/python/obitools3/commands/head.pyx b/python/obitools3/commands/head.pyx
index 4a44067..ab55d40 100755
--- a/python/obitools3/commands/head.pyx
+++ b/python/obitools3/commands/head.pyx
@@ -16,7 +16,7 @@ from io import BufferedWriter
 from cpython.exc cimport PyErr_CheckSignals
 
 
-__title__="Keep the N first lines of a view."
+__title__="Keep the N first lines of a view"
 
  
 def addOptions(parser):
diff --git a/python/obitools3/commands/import.pyx b/python/obitools3/commands/import.pyx
index b2d4a9e..d5eb1ba 100755
--- a/python/obitools3/commands/import.pyx
+++ b/python/obitools3/commands/import.pyx
@@ -52,7 +52,7 @@ from cpython.exc cimport PyErr_CheckSignals
 from io import BufferedWriter
 
 
-__title__="Imports sequences from different formats into a DMS"
+__title__="Import sequences from different formats into a DMS"
  
  
 default_config = {   'destview'     : None,
diff --git a/python/obitools3/commands/ngsfilter.pyx b/python/obitools3/commands/ngsfilter.pyx
index 9ffc7c6..22c6c6e 100644
--- a/python/obitools3/commands/ngsfilter.pyx
+++ b/python/obitools3/commands/ngsfilter.pyx
@@ -24,7 +24,7 @@ from cpython.exc cimport PyErr_CheckSignals
 from io import BufferedWriter
 
 
-__title__="Assigns sequence records to the corresponding experiment/sample based on DNA tags and primers"
+__title__="Assign sequence records to the corresponding experiment/sample based on DNA tags and primers"
 
 
 def addOptions(parser):
diff --git a/python/obitools3/commands/sort.pyx b/python/obitools3/commands/sort.pyx
index 163bc66..77b7be9 100755
--- a/python/obitools3/commands/sort.pyx
+++ b/python/obitools3/commands/sort.pyx
@@ -36,7 +36,7 @@ NULL_VALUE = {OBI_BOOL: OBIBool_NA,
               OBI_STR: b""}
  
 
-__title__="Sort view lines according to the value of a given attribute."
+__title__="Sort view lines according to the value of a given attribute"
 
  
 def addOptions(parser):
diff --git a/python/obitools3/commands/stats.pyx b/python/obitools3/commands/stats.pyx
index 8bff566..635adbe 100755
--- a/python/obitools3/commands/stats.pyx
+++ b/python/obitools3/commands/stats.pyx
@@ -16,7 +16,7 @@ import sys
 from cpython.exc cimport PyErr_CheckSignals
 
 
-__title__="Compute basic statistics for attribute values."
+__title__="Compute basic statistics for attribute values"
 
 '''
 `obi stats` computes basic statistics for attribute values of sequence records.
diff --git a/python/obitools3/commands/tail.pyx b/python/obitools3/commands/tail.pyx
index 7024fa0..a0759bf 100755
--- a/python/obitools3/commands/tail.pyx
+++ b/python/obitools3/commands/tail.pyx
@@ -15,7 +15,7 @@ from cpython.exc cimport PyErr_CheckSignals
 from io import BufferedWriter
 
 
-__title__="Keep the N last lines of a view."
+__title__="Keep the N last lines of a view"
 
  
 def addOptions(parser):
diff --git a/python/obitools3/commands/test.pyx b/python/obitools3/commands/test.pyx
index e819074..76e6952 100755
--- a/python/obitools3/commands/test.pyx
+++ b/python/obitools3/commands/test.pyx
@@ -39,7 +39,7 @@ COL_COMMENTS_MAX_LEN = 2048
 MAX_INT = 2147483647    # used to generate random float values
  
  
-__title__="Tests if the obitools are working properly"
+__title__="Test if the obitools are working properly"
 
 
 default_config = {