diff --git a/python/obitools3/commands/test.pyx b/python/obitools3/commands/test.pyx index 2e7e8c6..cdd1363 100644 --- a/python/obitools3/commands/test.pyx +++ b/python/obitools3/commands/test.pyx @@ -13,6 +13,13 @@ from obitools3.dms.capi.obitypes cimport OBI_INT, \ OBI_CHAR, \ OBI_STR, \ OBI_SEQ + +from obitools3.dms.capi.obiview cimport NUC_SEQUENCE_COLUMN, \ + ID_COLUMN, \ + DEFINITION_COLUMN, \ + QUALITY_COLUMN, \ + COUNT_COLUMN + import shutil import string import random @@ -20,10 +27,6 @@ import random VIEW_TYPES = [b"", b"NUC_SEQS_VIEW"] COL_TYPES = [OBI_INT, OBI_FLOAT, OBI_BOOL, OBI_CHAR, OBI_STR, OBI_SEQ] -NUC_SEQUENCE_COLUMN = b"NUC_SEQ" -ID_COLUMN = b"ID" -DEFINITION_COLUMN = b"DEFINITION" -QUALITY_COLUMN = b"QUALITY" SPECIAL_COLUMNS = [NUC_SEQUENCE_COLUMN, ID_COLUMN, DEFINITION_COLUMN, QUALITY_COLUMN] #TAXDUMP = "" TODO path=?