From 32fd7b5a6bfb3d468cde8da17de4ad311b1ebdc1 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Wed, 27 May 2015 15:05:14 +0200
Subject: [PATCH] rename falsly named files *.pyx in *.pxd ;-)

---
 doc/.gitignore                                |  1 +
 python/obitools3/obidms/capidms.pxd           | 19 ++++++++++++++++
 python/obitools3/obidms/capidms.pyd           | 19 ----------------
 python/obitools3/obidms/capidms.pyx           | 22 +++----------------
 .../{capidmscolumn.pyd => capidmscolumn.pxd}  |  0
 5 files changed, 23 insertions(+), 38 deletions(-)
 create mode 100644 python/obitools3/obidms/capidms.pxd
 delete mode 100644 python/obitools3/obidms/capidms.pyd
 rename python/obitools3/obidms/obidmscolumn/{capidmscolumn.pyd => capidmscolumn.pxd} (100%)

diff --git a/doc/.gitignore b/doc/.gitignore
index a5b098c..ccd0596 100644
--- a/doc/.gitignore
+++ b/doc/.gitignore
@@ -1,2 +1,3 @@
 /build/
 /doxygen/
+/build_dir.txt
diff --git a/python/obitools3/obidms/capidms.pxd b/python/obitools3/obidms/capidms.pxd
new file mode 100644
index 0000000..b497243
--- /dev/null
+++ b/python/obitools3/obidms/capidms.pxd
@@ -0,0 +1,19 @@
+cdef extern from *:
+    ctypedef char* const_char_p "const char*"
+
+cdef extern from "obidms.h" nogil:
+    struct OBIDMS_t:
+        pass
+
+    ctypedef OBIDMS_t* OBIDMS_p 
+
+    OBIDMS_p obi_create_dms(const_char_p name)
+
+    OBIDMS_p obi_open_dms(const_char_p name)
+
+    OBIDMS_p obi_dms(const_char_p name)
+
+    int obi_close_dms(OBIDMS_p dms)
+
+cdef class OBIDMS:
+    cdef OBIDMS_p pointer
diff --git a/python/obitools3/obidms/capidms.pyd b/python/obitools3/obidms/capidms.pyd
deleted file mode 100644
index eee5219..0000000
--- a/python/obitools3/obidms/capidms.pyd
+++ /dev/null
@@ -1,19 +0,0 @@
-cdef extern from *:
-    ctypedef char* const_char_p "const char*"
-
-
-cdef extern from "obidms.h":
-	struct OBIDMS_t:
-        pass
-    
-	ctypedef OBIDMS_t* OBIDMS_p 
-
-	OBIDMS_p obi_create_dms(const_char_p name)
-	
-	OBIDMS_p obi_open_dms(const_char_p name)
-	
-	int obi_close_dms(OBIDMS_p dms)
-	
-cdef class OBIDMS:
-	cdef OBIDMS_p pointer
-	
\ No newline at end of file
diff --git a/python/obitools3/obidms/capidms.pyx b/python/obitools3/obidms/capidms.pyx
index e96b365..18b3796 100644
--- a/python/obitools3/obidms/capidms.pyx
+++ b/python/obitools3/obidms/capidms.pyx
@@ -1,27 +1,11 @@
-#from .capidms cimport *
-
-cdef extern from *:
-    ctypedef char* const_char_p "const char*"
-
-cdef extern from "obidms.h":
-    struct OBIDMS_t:
-        pass
-
-    ctypedef OBIDMS_t* OBIDMS_p 
-
-    OBIDMS_p obi_create_dms(const_char_p name)
-    
-    OBIDMS_p obi_open_dms(const_char_p name)
-    
-    int obi_close_dms(OBIDMS_p dms)
+#cython: language_level=3
 
+from .capidms cimport *
 
 cdef class OBIDMS:
     
-    cdef OBIDMS_p pointer
-
     def __init__(self,name):
-        self.pointer = obi_create_dms(name)
+        self.pointer = obi_dms(name)
         
     def __del__(self):
         obi_close_dms(self.pointer)
\ No newline at end of file
diff --git a/python/obitools3/obidms/obidmscolumn/capidmscolumn.pyd b/python/obitools3/obidms/obidmscolumn/capidmscolumn.pxd
similarity index 100%
rename from python/obitools3/obidms/obidmscolumn/capidmscolumn.pyd
rename to python/obitools3/obidms/obidmscolumn/capidmscolumn.pxd