From 38e603ed57645610f8f012aac37f629d35f3e0e2 Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Fri, 10 Jun 2016 10:34:47 +0200
Subject: [PATCH] Deleted some redundant cython code

---
 python/obitools3/obidms/_obidms.pyx | 29 +++--------------------------
 1 file changed, 3 insertions(+), 26 deletions(-)

diff --git a/python/obitools3/obidms/_obidms.pyx b/python/obitools3/obidms/_obidms.pyx
index 4b3dfcd..f0bf455 100644
--- a/python/obitools3/obidms/_obidms.pyx
+++ b/python/obitools3/obidms/_obidms.pyx
@@ -314,7 +314,7 @@ cdef class OBIView :
     cpdef delete_column(self, str column_name) :
         
         cdef int i
-        cdef Obiview_p view
+        cdef Obiview_p view_p
         cdef OBIDMS_column column
         cdef OBIDMS_column_p column_p
         cdef OBIDMS_column_header_p header
@@ -322,7 +322,7 @@ cdef class OBIView :
  
         view = self.pointer
  
-        if obi_view_delete_column(view, str2bytes(column_name)) < 0 :
+        if obi_view_delete_column(view_p, str2bytes(column_name)) < 0 :
             raise Exception("Problem deleting a column from a view")
         
         # Update the dictionaries of column pointers and column objects, and update pointers in column objects (make function?):
@@ -330,7 +330,7 @@ cdef class OBIView :
         
         for column_n in self.columns :
             (self.columns[column_n]).update_pointer()
-
+    
     
     cpdef add_column(self, 
                      str column_name, 
@@ -502,28 +502,6 @@ cdef class OBIView_NUC_SEQS(OBIView):
         self.sequences = self.columns[bytes2str(NUC_SEQUENCE_COLUMN)]
         self.definitions = self.columns[bytes2str(DEFINITION_COLUMN)]
         self.qualities = self.columns[bytes2str(QUALITY_COLUMN)]
-
-
-    cpdef delete_column(self, str column_name) :
-        
-        cdef int i
-        cdef Obiview_p view_p
-        cdef OBIDMS_column column
-        cdef OBIDMS_column_p column_p
-        cdef OBIDMS_column_header_p header
-        cdef str column_n
- 
-        view_p = self.pointer
- 
-        if obi_view_delete_column(view_p, str2bytes(column_name)) < 0 :
-            raise Exception("Problem deleting a column from a view")
-        
-        # Remove instance from the dictionary
-        (self.columns).pop(column_name)
-        
-        for column_n in self.columns :
-            (self.columns[column_n]).update_pointer()
-
             
     def __getitem__(self, object item) :
         if type(item) == str :
@@ -531,7 +509,6 @@ cdef class OBIView_NUC_SEQS(OBIView):
         elif type(item) == int :
             return OBI_Nuc_Seq_Stored(self, item)
     
-    
     def __setitem__(self, index_t line_idx, OBI_Nuc_Seq sequence_obj) :
         for key in sequence_obj :
             self[line_idx][key] = sequence_obj[key]