diff --git a/python/obi.py b/python/obi.py index 31fdb03..425cea5 100644 --- a/python/obi.py +++ b/python/obi.py @@ -27,9 +27,20 @@ default_config = { 'software' : "The OBITools", 'outputview' : None, 'skip' : 0, 'only' : None, + 'fileformat' : None, 'skiperror' : True, - 'qualityformat' : 'sanger', - 'moltype' : 'nuc' + 'qualityformat' : b'sanger', + 'qualityoffset' : -1, + 'noquality' : False, + 'seqtype' : b'nuc', + "header" : False, + "sep" : None, + "quote" : [b"'",b'"'], + "dec" : b".", + "nastring" : b"NA", + "stripwhite" : True, + "blanklineskip" : True, + "commentchar" : b"#" } root_config_name='obi'