From 50c60404667d07e4237900fecc09df304d673965 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Tue, 26 May 2015 10:39:28 +0200
Subject: [PATCH] description of the obitools3 package for the python installer

---
 MANIFEST.in      |  5 ++--
 requirements.txt |  1 +
 setup.py         | 63 ++++++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 67 insertions(+), 2 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index 95c028b..e4cd15c 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,10 +1,11 @@
 include setup.py
 recursive-include distutils.ext *.py *.c *.pem
-recursive-include src *.pyx *.pxd *.c *.h *.cfiles
+recursive-include python *.pyx *.pxd *.c *.h *.cfiles
+recursive-include src *.c *.h
 recursive-include doc/sphinx/source *.txt *.rst *.py
 recursive-include doc/sphinx/sphinxext *.py
-include doc/sphinx/make.bat
 include doc/sphinx/Makefile
+include doc/sphinx/Doxyfile
 include README.txt
 include requirements.txt
 
diff --git a/requirements.txt b/requirements.txt
index fef5fde..6b08d55 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -2,3 +2,4 @@
 Cython>=0.21
 Sphinx>=1.2.0
 ipython>=3.0.0
+breathe>=4.0.0
diff --git a/setup.py b/setup.py
index e69de29..822522a 100644
--- a/setup.py
+++ b/setup.py
@@ -0,0 +1,63 @@
+#!/usr/bin/env python
+
+import sys
+
+PACKAGE     = "OBITools3"
+VERSION     = "0.0.0"
+AUTHOR      = 'Eric Coissac'
+EMAIL       = 'eric@coissac.eu'
+URL         = 'metabarcoding.org/obitools3'
+LICENSE     = 'CeCILL-V2'
+DESCRIPTION ="Scripts and library for DNA metabarcoding",
+
+SRC       = 'python'
+CSRC      = 'src'
+
+classifiers=['Development Status :: 1 - Planning',
+             'Environment :: Console',
+             'Intended Audience :: Science/Research',
+             'License :: Other/Proprietary License',
+             'Operating System :: Unix',
+             'Programming Language :: Python',
+             'Programming Language :: Python :: 3',
+             'Topic :: Scientific/Engineering :: Bio-Informatics',
+             'Topic :: Utilities',
+             ]
+
+
+PYTHONMIN='3.4'
+
+
+sys.path.append('distutils.ext')
+sys.path.append(SRC)
+
+if __name__=="__main__":
+    
+    try:
+        from obitools3 import version
+        VERSION     = version.version
+    except ImportError:
+        pass
+
+    from obidistutils.serenity import serenity_mode
+    
+    serenity=serenity_mode(PACKAGE,VERSION)
+
+    from obidistutils.core import setup
+    from obidistutils.core import CTOOLS
+    from obidistutils.core import CEXES
+    from obidistutils.core import FILES
+    
+    setup(name=PACKAGE,
+          description=DESCRIPTION,
+          classifiers=classifiers,
+          version=VERSION,
+          author=AUTHOR,
+          author_email=EMAIL,
+          license=LICENSE,
+          url=URL,
+          python_src=SRC,
+          sse='sse2',
+          serenity=serenity,
+          pythonmin=PYTHONMIN)
+