From 720bb65b2456bbbd98b25b04df2bd09809e41b6d Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Thu, 7 Mar 2019 14:01:37 +0100
Subject: [PATCH] Installation: basic Makefile that creates the shared obi3
 library used by Cython

---
 Makefile | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100644 Makefile

diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..91d5b37
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,35 @@
+ifeq ($(CC),gcc)
+	LFLAGS = -fopenmp 
+else
+	LFLAGS = 
+endif
+
+OBJ_DIR := obi_objdir
+LIB_DIR := obi_libdir
+
+OBJ_FILES = $(OBJ_DIR)/*.o
+DYN_LIB_FILES = $(LIB_DIR)/libobi3.so
+
+default: $(DYN_LIB_FILES)
+
+$(DYN_LIB_FILES): | $(LIB_DIR)
+
+$(LIB_DIR):
+	mkdir -p $(LIB_DIR)
+
+$(OBJ_FILES): | $(OBJ_DIR)
+
+$(OBJ_DIR):
+	mkdir -p $(OBJ_DIR)
+
+$(LIB_DIR)/libobi3.so: $(OBJ_FILES)
+	$(CC) -shared -o $@ $^
+
+$(OBJ_DIR)/%.o: \
+
+	$(CC) $(LFLAGS) -fpic -c src/libecoPCR/libapat/*.c src/libecoPCR/libthermo/*.c src/libecoPCR/*.c src/libjson/*.c src/*.c src/*.h
+	mv *.o $(OBJ_DIR)
+	
+clean:
+	rm -rf $(LIB_DIR)
+	rm -rf $(OBJ_DIR)
\ No newline at end of file