From 7c3fa14789668ce944de7e5d7cdd2da4eb6d8c4f Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Fri, 20 Sep 2019 20:43:48 +0200
Subject: [PATCH] obi import: fixed bug when reading output URI

---
 python/obitools3/commands/import.pyx | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/python/obitools3/commands/import.pyx b/python/obitools3/commands/import.pyx
index 8289c44..56c0b59 100755
--- a/python/obitools3/commands/import.pyx
+++ b/python/obitools3/commands/import.pyx
@@ -126,6 +126,8 @@ def run(config):
         
     if config['obi']['taxdump']: 
         dms_only=True
+    else:
+        dms_only=False
     
     output = open_uri(config['obi']['outputURI'],
                       input=False,