From 9063e9159da9e6468d04e4a60a6ef577829f65da Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Tue, 17 Sep 2019 13:19:17 +0200 Subject: [PATCH] Export options: output option is now only non-positional for obi export --- python/obitools3/apps/optiongroups/__init__.py | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/python/obitools3/apps/optiongroups/__init__.py b/python/obitools3/apps/optiongroups/__init__.py index 9a1800c..6dbd250 100755 --- a/python/obitools3/apps/optiongroups/__init__.py +++ b/python/obitools3/apps/optiongroups/__init__.py @@ -210,7 +210,7 @@ def addAllInputOption(optionManager): def __addOutputOption(optionManager): - optionManager.add_argument('-o', + optionManager.add_argument( dest='obi:outputURI', metavar='OUTPUT', help='Data destination URI') @@ -238,6 +238,11 @@ def __addDMSOutputOption(optionManager): def __addExportOutputOption(optionManager): group = optionManager.add_argument_group("Output format options for exported files") + group.add_argument('-o', + dest='obi:outputURI', + metavar='OUTPUT', + help='Data destination URI') + group.add_argument('--fasta-output', action="store_const", dest="obi:outputformat", default=None, @@ -287,7 +292,6 @@ def addTabularOutputOption(optionManager): def addExportOutputOption(optionManager): - __addOutputOption(optionManager) __addExportOutputOption(optionManager) __addTabularOption(optionManager)