From 9334cf6cc626f295d6502a4dca891166d199ca1d Mon Sep 17 00:00:00 2001 From: mercierc Date: Thu, 17 Jun 2021 08:42:01 +1200 Subject: [PATCH] import: improved genbank parser and switch to version 3.0.1.b10 --- python/obitools3/parsers/genbank.pyx | 2 +- python/obitools3/version.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/python/obitools3/parsers/genbank.pyx b/python/obitools3/parsers/genbank.pyx index 3df0304..2828b49 100755 --- a/python/obitools3/parsers/genbank.pyx +++ b/python/obitools3/parsers/genbank.pyx @@ -25,7 +25,7 @@ from libc.string cimport strcpy, strlen _featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN )',re.DOTALL + re.M) _headerMatcher = re.compile(b'^LOCUS.+(?=\nFEATURES)', re.DOTALL + re.M) -_seqMatcher = re.compile(b'ORIGIN .+(?=//\n)', re.DOTALL + re.M) +_seqMatcher = re.compile(b'^ORIGIN .+(?=//\n)', re.DOTALL + re.M) _cleanSeq1 = re.compile(b'ORIGIN.+\n') _cleanSeq2 = re.compile(b'[ \n0-9]+') _acMatcher = re.compile(b'(?<=^ACCESSION ).+',re.M) diff --git a/python/obitools3/version.py b/python/obitools3/version.py index 62c56cd..98a6e22 100755 --- a/python/obitools3/version.py +++ b/python/obitools3/version.py @@ -1,5 +1,5 @@ major = 3 minor = 0 -serial= '1b9' +serial= '1b10' version ="%d.%d.%s" % (major,minor,serial)