From 9aaf2d264a3af381d3bfd2488a3f484f6dbf14e5 Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Fri, 25 Sep 2015 11:29:17 +0200
Subject: [PATCH] test

---
 python/obitools3/__init__.pyc                 | Bin 0 -> 115 bytes
 python/obitools3/obidms/_obidms.c             |   1 +
 python/obitools3/obidms/capi/obidms.pxd       |   8 +++++
 python/obitools3/obidms/capi/obidmscolumn.pxd |  19 ++++++++++
 python/obitools3/obidms/capi/obierrno.pxd     |   3 ++
 python/obitools3/obidms/capi/obitypes.pxd     |  33 ++++++++++++++++++
 python/obitools3/utils.pxd                    |   3 ++
 python/obitools3/utils.pyx                    |   5 +++
 python/obitools3/version.pyc                  | Bin 0 -> 228 bytes
 9 files changed, 72 insertions(+)
 create mode 100644 python/obitools3/__init__.pyc
 create mode 100644 python/obitools3/obidms/_obidms.c
 create mode 100644 python/obitools3/obidms/capi/obidms.pxd
 create mode 100644 python/obitools3/obidms/capi/obidmscolumn.pxd
 create mode 100644 python/obitools3/obidms/capi/obierrno.pxd
 create mode 100644 python/obitools3/obidms/capi/obitypes.pxd
 create mode 100644 python/obitools3/utils.pxd
 create mode 100644 python/obitools3/utils.pyx
 create mode 100644 python/obitools3/version.pyc

diff --git a/python/obitools3/__init__.pyc b/python/obitools3/__init__.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..418f2f11dced2002940376ce0d974c3d107cd488
GIT binary patch
literal 115
zcmZSn%**xna$0CI0~9a<X$K%KW&si@3=F{<AQ3+eAi;n}6w3g`3Mxx7^7HiblQK*4
l^K*)g_2c6+^D;}~<Mn_t96$v&x%nxjIjMFaV~T;80RU=W73Kf{

literal 0
HcmV?d00001

diff --git a/python/obitools3/obidms/_obidms.c b/python/obitools3/obidms/_obidms.c
new file mode 100644
index 0000000..06f2230
--- /dev/null
+++ b/python/obitools3/obidms/_obidms.c
@@ -0,0 +1 @@
+#error Do not use this file, it is the result of a failed Cython compilation.
diff --git a/python/obitools3/obidms/capi/obidms.pxd b/python/obitools3/obidms/capi/obidms.pxd
new file mode 100644
index 0000000..5b922eb
--- /dev/null
+++ b/python/obitools3/obidms/capi/obidms.pxd
@@ -0,0 +1,8 @@
+cdef extern from "obidms.h" nogil:
+    struct OBIDMS_t:
+        pass
+
+    ctypedef OBIDMS_t* OBIDMS_p 
+
+    OBIDMS_p obi_dms(const_char_p dms_name)
+    int obi_close_dms(OBIDMS_p dms)
diff --git a/python/obitools3/obidms/capi/obidmscolumn.pxd b/python/obitools3/obidms/capi/obidmscolumn.pxd
new file mode 100644
index 0000000..1492402
--- /dev/null
+++ b/python/obitools3/obidms/capi/obidmscolumn.pxd
@@ -0,0 +1,19 @@
+cdef extern from "obidmscolumn.h" nogil:
+    struct OBIDMS_column_t:
+        pass
+
+    ctypedef OBIDMS_column_t* OBIDMS_column_p
+
+    OBIDMS_column_p obi_create_column(OBIDMS_p dms, const char* column_name, OBIType_t type, size_t nb_lines, size_t nb_elements_per_line, const char* elements_names)
+    size_t obi_column_get_nb_lines_used(OBIDMS_column_p column)
+    const char* obi_column_get_elements_names(OBIDMS_column_p column)
+    void obi_column_make_unwritable(OBIDMS_column_p column)
+    OBIDMS_column_p obi_open_column(OBIDMS_p dms, const char* column_name, obiversion_t version_number)
+    OBIType_t obi_column_get_type(OBIDMS_column_p column)
+    int obi_close_column(OBIDMS_column_p column)
+    OBIType_t obi_column_get_data_type_from_name(OBIDMS_p dms, const char* column_name)
+    OBIDMS_column_p obi_clone_column(OBIDMS_p dms, const char* column_name, obiversion_t version_number, bint clone_data)
+    int obi_truncate_and_close_column(OBIDMS_column_p column)
+    obiversion_t obi_column_get_latest_version_from_name(OBIDMS_p dms, const char* column_name)
+    OBIType_t obi_column_get_data_type_from_name(OBIDMS_p dms, const char* column_name)
+    size_t obi_column_get_line_count_from_name(OBIDMS_p dms, const char* column_name)
diff --git a/python/obitools3/obidms/capi/obierrno.pxd b/python/obitools3/obidms/capi/obierrno.pxd
new file mode 100644
index 0000000..186d945
--- /dev/null
+++ b/python/obitools3/obidms/capi/obierrno.pxd
@@ -0,0 +1,3 @@
+cdef extern from "obierrno.h" nogil:
+    extern int obi_errno
+
diff --git a/python/obitools3/obidms/capi/obitypes.pxd b/python/obitools3/obidms/capi/obitypes.pxd
new file mode 100644
index 0000000..cd3a75e
--- /dev/null
+++ b/python/obitools3/obidms/capi/obitypes.pxd
@@ -0,0 +1,33 @@
+from libc.stdint cimport int32_t
+
+
+cdef extern from *:
+    ctypedef char* const_char_p "const char*"
+
+cdef extern from "obidmscolumn.h" nogil:
+
+    ctypedef int32_t obiversion_t
+
+cdef extern from "obitypes.h" nogil:
+
+    enum OBIType:       # TODO je sais pas si ça sert de declarer le contenu de l'enum
+        OBI_VOID = 0,
+        OBI_INT,
+        OBI_FLOAT,
+        OBI_BOOL,
+        OBI_CHAR,
+        OBI_IDX
+    
+    ctypedef OBIType OBIType_t
+
+
+    enum OBIBool:
+        pass
+    
+    ctypedef OBIBool obibool_t
+    ctypedef int32_t obiint_t
+    ctypedef double obifloat_t
+    ctypedef char obichar_t  
+    ctypedef size_t obiidx_t
+
+    char* name_data_type(int data_type)
diff --git a/python/obitools3/utils.pxd b/python/obitools3/utils.pxd
new file mode 100644
index 0000000..b37e77a
--- /dev/null
+++ b/python/obitools3/utils.pxd
@@ -0,0 +1,3 @@
+cdef bytes str2bytes(str string)
+
+cdef str bytes2str(bytes string)
\ No newline at end of file
diff --git a/python/obitools3/utils.pyx b/python/obitools3/utils.pyx
new file mode 100644
index 0000000..0d22078
--- /dev/null
+++ b/python/obitools3/utils.pyx
@@ -0,0 +1,5 @@
+cdef bytes str2bytes(str string):
+    return string.encode('ascii')
+
+cdef str bytes2str(bytes string):
+    return string.decode('ascii')
\ No newline at end of file
diff --git a/python/obitools3/version.pyc b/python/obitools3/version.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..07730593e18e480df1319d36d89f15dbdafa3c35
GIT binary patch
literal 228
zcmZSn%*(ZT{-@An1}I<w(hfjetO+Di7#N};BqKu#BSRDuLkbf^Dg#3*BSR_^LmD%K
zSQIlu3Nu5n21r{bBakRz0uqL1#oRzj)hI<z)c`~k`+-%IumVMM6SMM*Ags(hAd3ws
zR-9UtnV3_;4rG?478Pga=V<_$3<#oF8ptiEEXl~v)6Y-JEXmK$DK^%Js?`HZZ~*0P
Va`RJ4b5iX<?kENs%f<+VOaM_rD$@V}

literal 0
HcmV?d00001