From 9eb833a0af84f098a6a3e011650b25c53c1f4fa9 Mon Sep 17 00:00:00 2001 From: mercierc Date: Tue, 1 Jun 2021 09:09:16 +1200 Subject: [PATCH] typo fix --- python/obitools3/commands/addtaxids.pyx | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/python/obitools3/commands/addtaxids.pyx b/python/obitools3/commands/addtaxids.pyx index 806c895..acfd27a 100755 --- a/python/obitools3/commands/addtaxids.pyx +++ b/python/obitools3/commands/addtaxids.pyx @@ -45,7 +45,7 @@ def addOptions(parser): metavar="", default=b"TAXID", help="Name of the tag to store the found taxid " - "(default: 'TAXID'.") + "(default: 'TAXID').") group.add_argument('-n', '--taxon-name-tag', action="store", @@ -53,7 +53,7 @@ def addOptions(parser): metavar="", default=b"SCIENTIFIC_NAME", help="Name of the tag giving the scientific name of the taxon " - "(default: 'SCIENTIFIC_NAME'.") + "(default: 'SCIENTIFIC_NAME').") group.add_argument('-g', '--try-genus-match', action="store_true", dest="addtaxids:try_genus_match", @@ -174,6 +174,7 @@ def run(config): taxid_column[i] = taxon.taxid found_count+=1 elif try_genus: # try finding genus or other parent taxon from the first word + #print(i, o_view[i].id) taxon_name_sp = taxon_name.split(b" ") taxon = taxo.get_taxon_by_name(taxon_name_sp[0], res_anc) if taxon is not None: