From 9f38cd8cf6ac1d4e902a7cd2447e7a33d0af6871 Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Tue, 23 Jul 2019 19:03:24 +0200 Subject: [PATCH] updated a comment --- src/upperband.c | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/src/upperband.c b/src/upperband.c index 7833963..9ff93ff 100755 --- a/src/upperband.c +++ b/src/upperband.c @@ -249,7 +249,7 @@ Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t se for (i=0; i < seq_count; i++) { - seq = obi_get_seq_with_elt_idx_and_col_p_in_view(view, seq_col, i, seq_idx); // TODO discuss 1 element per line mandatory + seq = obi_get_seq_with_elt_idx_and_col_p_in_view(view, seq_col, i, seq_idx); if (seq == NULL) return NULL; // TODO or not ktable[i].table = malloc(256 * sizeof(unsigned char)); @@ -320,10 +320,10 @@ bool is_possible(Kmer_table_p ktable, index_t idx1, index_t idx2, int l1, int l2 int32_t lcs; int32_t mincount; - if (l1 < 12 || l2 < 12) + if ((l1 < 12) || (l2 < 12)) return true; - if (reference==ALILEN || reference==MAXLEN) + if ((reference==ALILEN) || (reference==MAXLEN)) reflen = l1; else reflen = l2; @@ -357,7 +357,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_ if (can_be_identical) { - if (obi_blob_compare(seq1, seq2) == 0) + if (obi_blob_compare(seq1, seq2) == 0) // seqs are identical: return max score { if (similarity_mode && normalize) *score = 1.0; @@ -365,6 +365,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_ *score = 0.0; else *score = l1; + return; } } @@ -374,7 +375,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_ return; } - else if (threshold != 0.0) + if (threshold != 0.0) { l2 = seq2->length_decoded_value;