diff --git a/src/obiavl.c b/src/obiavl.c index f1346fb..d729e85 100644 --- a/src/obiavl.c +++ b/src/obiavl.c @@ -310,7 +310,7 @@ int byte_array_compare(Obi_byte_array_p value_1, Obi_byte_array_p value_2); * @since October 2015 * @author Celine Mercier (celine.mercier@metabarcoding.org) */ -int32_t byte_array_sizeof(Obi_byte_array_p value); +int byte_array_sizeof(Obi_byte_array_p value); /** @@ -1006,7 +1006,6 @@ int byte_array_compare(Obi_byte_array_p value_1, Obi_byte_array_p value_2) comp = 0; while (!comp && (b < value_1->length_encoded_value)) { - //fprintf(stderr, "\ncomparing %c and %c", *((value_1->value)+b), *((value_2->value)+b)); comp = *((value_1->value)+b) - *((value_2->value)+b); b++; } @@ -1014,7 +1013,7 @@ int byte_array_compare(Obi_byte_array_p value_1, Obi_byte_array_p value_2) } -int32_t byte_array_sizeof(Obi_byte_array_p value) +int byte_array_sizeof(Obi_byte_array_p value) { return (sizeof(Obi_byte_array_t) + (value->length_encoded_value)); } @@ -1023,7 +1022,7 @@ int32_t byte_array_sizeof(Obi_byte_array_p value) index_t avl_add_value_in_data_array(OBIDMS_avl_p avl, Obi_byte_array_p value) { index_t value_idx; - int32_t value_size; + int value_size; value_idx = ((avl->data)->header)->data_size_used; @@ -2050,8 +2049,7 @@ int obi_close_avl_group(OBIDMS_avl_group_p avl_group) Obi_byte_array_p obi_avl_get(OBIDMS_avl_p avl, index_t idx) { - obidebug(1, "\ngetting >%s", ((Obi_byte_array_p)((avl->data)->data)+idx)->value); - return ((Obi_byte_array_p)((avl->data)->data)+idx); + return ((Obi_byte_array_p)(((avl->data)->data)+idx)); } @@ -2211,11 +2209,8 @@ index_t obi_avl_find(OBIDMS_avl_p avl, Obi_byte_array_p value) if (comp == 0) { // Check if really same value - //fprintf(stderr, "\ngonna get\n"); to_compare = obi_avl_get(avl, current_node->value); - //fprintf(stderr, "\ngot, gonna compare\n"); comp = byte_array_compare(to_compare, value); - //fprintf(stderr, "\ncompared\n"); } if (comp > 0) @@ -2239,14 +2234,9 @@ Obi_byte_array_p obi_avl_group_get(OBIDMS_avl_group_p avl_group, index_t idx) int32_t avl_idx; index_t idx_in_avl; - //fprintf(stderr, "\noriginal index = %lld", idx); - avl_idx = (int32_t) (idx >> 32); idx_in_avl = idx & 0x00000000FFFFFFFF; - //fprintf(stderr, "\navl index = %d", avl_idx); - //fprintf(stderr, "\nindex in avl = %lld", idx_in_avl); - return obi_avl_get((avl_group->sub_avls)[avl_idx], idx_in_avl); } @@ -2257,13 +2247,9 @@ index_t obi_avl_group_add(OBIDMS_avl_group_p avl_group, Obi_byte_array_p value) index_t index_with_avl; int i; - //fprintf(stderr, "\nAdding %s", value->value); - if (maybe_in_avl((avl_group->sub_avls)[avl_group->current_avl_idx], value)) { - //fprintf(stderr, "\nmaybe in current AVL"); index_in_avl = (int32_t) obi_avl_find((avl_group->sub_avls)[avl_group->current_avl_idx], value); - //fprintf(stderr, "\nfind went fine\n"); if (index_in_avl >= 0) { index_with_avl = avl_group->current_avl_idx; @@ -2276,7 +2262,6 @@ index_t obi_avl_group_add(OBIDMS_avl_group_p avl_group, Obi_byte_array_p value) { if (maybe_in_avl((avl_group->sub_avls)[i], value)) { - //fprintf(stderr, "\nmaybe in AVL %d", i); if (remap_an_avl((avl_group->sub_avls)[i]) < 0) return -1; index_in_avl = (int32_t) obi_avl_find((avl_group->sub_avls)[i], value); @@ -2300,8 +2285,6 @@ index_t obi_avl_group_add(OBIDMS_avl_group_p avl_group, Obi_byte_array_p value) return -1; } - //fprintf(stderr, "\nAdding in current AVL"); - // Add in the current AVL bloom_add(&((((avl_group->sub_avls)[avl_group->current_avl_idx])->header)->bloom_filter), value, byte_array_sizeof(value)); index_in_avl = (int32_t) obi_avl_add((avl_group->sub_avls)[avl_group->current_avl_idx], value);