diff --git a/python/obitools3/commands/import.pyx b/python/obitools3/commands/import.pyx index 1520472..5f936ed 100644 --- a/python/obitools3/commands/import.pyx +++ b/python/obitools3/commands/import.pyx @@ -87,11 +87,9 @@ def run(config): DMS.obi_atexit() logger("info","obi import : imports file into an DMS") - + input = open_uri(config['obi']['inputURI']) - - print(input) - + if input[2]==Nuc_Seq: v = View_NUC_SEQS else: @@ -105,8 +103,8 @@ def run(config): if output is None: raise Exception("Could not create output view") - print("input:", input) - print("output:", output) + #print("input:", input) + #print("output:", output) pb = ProgressBar(1000000, config, seconde=5) # TODO should be number of records in file @@ -141,7 +139,6 @@ def run(config): if i == 0: get_quality = b"QUALITY" in seq if get_quality: - print("yah") Column.new_column(view, b"QUALITY", OBI_QUAL) qual_col = view[b"QUALITY"]