From ca6e3e7aade73d5f721b3842cb11c37e9cf39c9b Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Wed, 20 May 2020 10:28:14 +0200 Subject: [PATCH] obi import: fixed to work with `seq` genbank extension --- python/obitools3/parsers/genbank.pyx | 2 ++ 1 file changed, 2 insertions(+) diff --git a/python/obitools3/parsers/genbank.pyx b/python/obitools3/parsers/genbank.pyx index b0572e8..50498f6 100755 --- a/python/obitools3/parsers/genbank.pyx +++ b/python/obitools3/parsers/genbank.pyx @@ -171,6 +171,8 @@ def genbankIterator_dir(dir_path, read = 0 read_files = 0 files = [filename for filename in glob.glob(os.path.join(path, b'*.gbff*'))] + files.extend([filename for filename in glob.glob(os.path.join(path, b'*.seq*'))]) # new genbank extension + files = list(set(files)) for filename in files: if read==only: return