From cd9cea8c974b91a6fc0e8f9b8e523ccbb0f54838 Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Thu, 9 Apr 2020 19:26:27 +0200
Subject: [PATCH] obi import: fixed critical bug where the last entry of embl
 and genbank files was not imported

---
 python/obitools3/parsers/embl.pyx    | 3 +++
 python/obitools3/parsers/genbank.pyx | 3 +++
 2 files changed, 6 insertions(+)

diff --git a/python/obitools3/parsers/embl.pyx b/python/obitools3/parsers/embl.pyx
index cd580fb..165eff2 100755
--- a/python/obitools3/parsers/embl.pyx
+++ b/python/obitools3/parsers/embl.pyx
@@ -156,6 +156,9 @@ def emblIterator_file(lineiterator,
         yield seq
         read+=1
     
+    # Last sequence
+    seq = emblParser(entry)
+        
     yield seq
     
     free(entry)
diff --git a/python/obitools3/parsers/genbank.pyx b/python/obitools3/parsers/genbank.pyx
index 8ddcc98..b0572e8 100755
--- a/python/obitools3/parsers/genbank.pyx
+++ b/python/obitools3/parsers/genbank.pyx
@@ -153,6 +153,9 @@ def genbankIterator_file(lineiterator,
         yield seq
         read+=1
     
+    # Last sequence
+    seq = genbankParser(entry)
+    
     yield seq
     
     free(entry)