diff --git a/python/obitools3/format/fasta.pyx b/python/obitools3/format/fasta.pyx index 9109707..259e368 100644 --- a/python/obitools3/format/fasta.pyx +++ b/python/obitools3/format/fasta.pyx @@ -8,14 +8,6 @@ cdef class FastaFormat: self.headerFormater = HeaderFormat(True, tags, printNAKeys) - - -# def __cinit(self): -# self.sequenceBufferLength=1000 -# self.sequenceBuffer = malloc(self.sequenceBufferLength) -# -# def __dealloc__(self) -# free(self.sequenceBuffer) @cython.boundscheck(False) def __call__(self, dict data): @@ -30,28 +22,7 @@ cdef class FastaFormat: brawseq = b'\n'.join(lines) return "%s\n%s" % (self.headerFormater(data),bytes2str(brawseq)) - -# cdef char* crowseq = brawseq -# cdef size_t needed_size = lseq + 1 -# -# needed_size += needed_size/ 50 -# -# if needed_size > self.sequenceBufferLength: -# self.sequenceBufferLength=needed_size -# self.sequenceBuffer = realloc(self.sequenceBuffer, -# self.sequenceBufferLength -# ) -# -# -# for i in range(0,lseq,60): -# if i+60 <= lseq: -# fasta[k:(k+60)]=seq[i:(i+60)] -# fasta[k+60]='\n' -# k+=61 -# else: -# fasta[k:(k+lseq-i)]=seq[i:lseq] -# k+=lseq-i - +