diff --git a/python/obitools3/commands/clean.pyx b/python/obitools3/commands/clean.pyx index b261213..dedc33d 100755 --- a/python/obitools3/commands/clean.pyx +++ b/python/obitools3/commands/clean.pyx @@ -2,7 +2,6 @@ from obitools3.apps.progress cimport ProgressBar # @UnresolvedImport from obitools3.dms.dms cimport DMS -from obitools3.dms.capi.obidms cimport OBIDMS_p from obitools3.dms.view import RollbackException from obitools3.dms.capi.obiclean cimport obi_clean from obitools3.apps.optiongroups import addMinimalInputOption, addMinimalOutputOption diff --git a/src/upperband.c b/src/upperband.c index 8059ca0..090b417 100755 --- a/src/upperband.c +++ b/src/upperband.c @@ -230,7 +230,7 @@ int thresholdLCS4(int32_t reflen, int32_t lcs) } -Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx) // TODO move in another file (obi_align.c) +Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx) // TODO move in another file (obi_lcs.c?) { size_t i; size_t seq_count; @@ -347,7 +347,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_ double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin, bool can_be_identical) { // score takes value -2 if filters are not passed, -1 if filters are passed and >= 0 with max score if the 2 sequences are identical. - // TODO move to obi_align.c + // TODO move to obi_lcs.c? int l1; int l2;