From d6056a8e50a63a69e369a59a7b596aa156b474b6 Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Sun, 31 Mar 2019 16:19:05 +0200
Subject: [PATCH] dirty temporary fix for install

---
 setup.py | 12 ++----------
 1 file changed, 2 insertions(+), 10 deletions(-)

diff --git a/setup.py b/setup.py
index 6384c06..eb5159d 100755
--- a/setup.py
+++ b/setup.py
@@ -54,19 +54,14 @@ cython_src  = [x for x in glob.iglob('python/obitools3/**/*.pyx',
                                      recursive=True
                                     )
               ]
-
-              
-            
+      
 #with open(os.path.join(os.path.dirname(__file__), 'README.rst')) as f:
 #    readme = f.read()
     
 install_clibdir_option="-DPYTHONLIB:STRING='%s'" % get_python_lib()
 
 subprocess.call(['cmake', install_clibdir_option, 'src'])
-subprocess.call(['make', '-C', 'src','install'])
-
-
-
+subprocess.call(['make','install'])   # temporary fix but should be in src
 
 cython_ext  = [Extension('.'.join([os.path.dirname(x).replace("python/",""),
                                    os.path.splitext(os.path.basename(x))[0]]).replace('/','.'),
@@ -88,7 +83,6 @@ cython_ext  = [Extension('.'.join([os.path.dirname(x).replace("python/",""),
                 for x in cython_src
               ]              
 
-
 xx = cythonize(cython_ext,
                language_level=3,
                annotate=True,
@@ -107,8 +101,6 @@ classifiers=['Development Status :: 1 - Planning',
              'Topic :: Utilities',
              ]
 
-
-
 setup(name=PACKAGE,
       description=DESCRIPTION,
       classifiers=classifiers,