../../../src/obi_lcs.h ../../../src/obi_lcs.c ../../../src/obierrno.h ../../../src/obierrno.c ../../../src/upperband.h ../../../src/upperband.c ../../../src/sse_banded_LCS_alignment.h ../../../src/sse_banded_LCS_alignment.c ../../../src/obiblob.h ../../../src/obiblob.c ../../../src/utils.h ../../../src/utils.c ../../../src/obidms.h ../../../src/obidms.c ../../../src/libjson/json_utils.h ../../../src/libjson/json_utils.c ../../../src/libjson/cJSON.h ../../../src/libjson/cJSON.c ../../../src/obiavl.h ../../../src/obiavl.c ../../../src/bloom.h ../../../src/bloom.c ../../../src/crc64.h ../../../src/crc64.c ../../../src/murmurhash2.h ../../../src/murmurhash2.c ../../../src/obidmscolumn.h ../../../src/obidmscolumn.c ../../../src/obitypes.h ../../../src/obitypes.c ../../../src/obidmscolumndir.h ../../../src/obidmscolumndir.c ../../../src/obiblob_indexer.h ../../../src/obiblob_indexer.c ../../../src/obiview.h ../../../src/obiview.c ../../../src/hashtable.h ../../../src/hashtable.c ../../../src/linked_list.h ../../../src/linked_list.c ../../../src/obidmscolumn_array.h ../../../src/obidmscolumn_array.c ../../../src/obidmscolumn_blob.h ../../../src/obidmscolumn_blob.c ../../../src/obidmscolumn_idx.h ../../../src/obidmscolumn_idx.c ../../../src/obidmscolumn_bool.h ../../../src/obidmscolumn_bool.c ../../../src/obidmscolumn_char.h ../../../src/obidmscolumn_char.c ../../../src/obidmscolumn_float.h ../../../src/obidmscolumn_float.c ../../../src/obidmscolumn_int.h ../../../src/obidmscolumn_int.c ../../../src/obidmscolumn_qual.h ../../../src/obidmscolumn_qual.c ../../../src/obidmscolumn_seq.h ../../../src/obidmscolumn_seq.c ../../../src/obidmscolumn_str.h ../../../src/obidmscolumn_str.c ../../../src/array_indexer.h ../../../src/array_indexer.c ../../../src/char_str_indexer.h ../../../src/char_str_indexer.c ../../../src/dna_seq_indexer.h ../../../src/dna_seq_indexer.c ../../../src/encode.c ../../../src/encode.h ../../../src/uint8_indexer.c ../../../src/uint8_indexer.h ../../../src/build_reference_db.c ../../../src/build_reference_db.h ../../../src/kmer_similarity.c ../../../src/kmer_similarity.h ../../../src/obi_clean.c ../../../src/obi_clean.h ../../../src/obi_ecopcr.c ../../../src/obi_ecopcr.h ../../../src/obi_ecotag.c ../../../src/obi_ecotag.h ../../../src/obidms_taxonomy.c ../../../src/obidms_taxonomy.h ../../../src/obilittlebigman.c ../../../src/obilittlebigman.h ../../../src/_sse.h ../../../src/obidebug.h ../../../src/libecoPCR/libapat/CODES/dft_code.h ../../../src/libecoPCR/libapat/CODES/dna_code.h ../../../src/libecoPCR/libapat/CODES/prot_code.h ../../../src/libecoPCR/libapat/apat_parse.c ../../../src/libecoPCR/libapat/apat_search.c ../../../src/libecoPCR/libapat/apat.h ../../../src/libecoPCR/libapat/Gmach.h ../../../src/libecoPCR/libapat/Gtypes.h ../../../src/libecoPCR/libapat/libstki.c ../../../src/libecoPCR/libapat/libstki.h ../../../src/libecoPCR/libthermo/nnparams.h ../../../src/libecoPCR/libthermo/nnparams.c ../../../src/libecoPCR/ecoapat.c ../../../src/libecoPCR/ecodna.c ../../../src/libecoPCR/ecoError.c ../../../src/libecoPCR/ecoMalloc.c ../../../src/libecoPCR/ecoPCR.h