From 2c3004f500764636caaa02e0a95f8ebc072f0ac0 Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Thu, 5 May 2022 06:57:02 +0200 Subject: [PATCH] Update Updating and release notes --- Updating-and-release-notes.md | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/Updating-and-release-notes.md b/Updating-and-release-notes.md index 09225e8..8bcac54 100644 --- a/Updating-and-release-notes.md +++ b/Updating-and-release-notes.md @@ -24,69 +24,86 @@ python3 setup.py install * `3.0.1b17`: - `import`: added import of UNITE fasta format +
* `3.0.1b16`: - `annotate`: fixed a bug where a column type could be wrongly guessed +
* `3.0.1b15`: - `split`: new command +
* `3.0.1b14`: - `export`: added options to export to metabaR compatible format - Various minor fixes and improvements +
* `3.0.1b13`: - `import`: more lenient handling of white spaces for genbank files +
* `3.0.1b12`: - `ecopcr`: now accepting taxonomy from a different DMS than the reference sequences - Various minor fixes and improvements +
* `3.0.1b11`: - `export`: integer missing values now imported as '0' for tabular format ; header now printed by default for tabular format ; and added option to only export specific keys/columns - Various minor fixes and improvements +
* `3.0.1b10`: - `import`: fixed a parsing issue with some GenBank files +
* `3.0.1b9`: - `import`: now imports and adds NCBI taxids for SILVA and RDP training set fasta files - various minor fixes and improvements +
* `3.0.1b8`: - `ecotag`: 'BEST_MATCH_TAXIDS' now dereplicated (no repeated taxids in the list) +
* `3.0.1b7`: - `alignpairedend`: fixed bug that would cut out sequence ends when it should not have +
* `3.0.1b6`: - Now handling large int values (`import` rewrites column in OBI_FLOAT if a value is > INT32_MAX) - Fixed a bug where some taxids could not be retrieved - `import`/`export`: fixed issue where the '\t' separator option was not read properly - `stats`: improved the tabular display to be properly read by R +
* `3.0.1b5`: - `obi rm`: new command to delete any view (for now the user deleting a view accepts that there will be missing information when running `obi history` if other views descend from the deleted view) +
* `3.0.1b4`: - `ngsfilter`: fixed critical bug where barcodes shorter than the forward primer would be missed - - `import`: fixed the import of tabular files with no header - +
+ * `3.0.1b3`: - `uniq`: now OK to use *-m* option even if only one unique key in information to merge (e.g. one sample) +
* `3.0.1b2`: - Made the OBITools3 more 'empty file friendly' +
* `3.0.1b1`: - The OBITools3 now work on the Windows Subsystem for Linux +
* `3.0.0b43`: - Dictionaries with one key are now handled +
* `3.0.0b42`: - `import`: improved Genbank file parser