From 55d051040a982f74cb7a7a6eec4bef510234f4f3 Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Wed, 9 Jun 2021 04:38:33 +0200 Subject: [PATCH] Update Wolf tutorial with the OBITools3 --- Wolf-tutorial-with-the-OBITools3.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/Wolf-tutorial-with-the-OBITools3.md b/Wolf-tutorial-with-the-OBITools3.md index ed31ca4..be268da 100644 --- a/Wolf-tutorial-with-the-OBITools3.md +++ b/Wolf-tutorial-with-the-OBITools3.md @@ -126,7 +126,11 @@ For EMBL files, you can give the path to a directory with several EMBL files. 3. Download the taxonomy: wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz - + + Check the md5, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with: + + md5sum taxdump.tar.gz + 4. Import the taxonomy in the DMS: obi import --taxdump taxdump.tar.gz wolf/taxonomy/my_tax