From 64d691a399099037195c90fcbb72d6b92168c881 Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Mon, 7 Mar 2022 05:00:46 +0100 Subject: [PATCH] Update Wolf tutorial with the OBITools3 --- Wolf-tutorial-with-the-OBITools3.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/Wolf-tutorial-with-the-OBITools3.md b/Wolf-tutorial-with-the-OBITools3.md index 9a8c8c1..dfdf821 100644 --- a/Wolf-tutorial-with-the-OBITools3.md +++ b/Wolf-tutorial-with-the-OBITools3.md @@ -112,14 +112,15 @@ Otherwise, to build the database yourself from the start: mkdir EMBL cd EMBL - wget -nH --cut-dirs=5 -A rel_std_*.dat.gz -R rel_std_hum_*.dat.gz,rel_std_env_*.dat.gz -m ftp://ftp.ebi.ac.uk/pub/databases/embl/release/std/ + wget -nH --cut-dirs=6 -A 'STD_*.dat.gz' -R 'STD_HUM*.dat.gz','STD_ENV*.dat.gz' -m -np ftp://ftp.ebi.ac.uk/pub/databases/ena/sequence/snapshot_latest/std/ + cd .. 2. Import the sequences in the DMS: obi import --embl EMBL wolf/embl_refs - For EMBL files, you can give the path to a directory with several EMBL files. + For EMBL files, you can give the path to a directory with several EMBL files. Same with GenBank files. **Note:** The reference database can be built in another DMS.