From 72303f4f2adb04ca45937933dfabdc9fa6e6c997 Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Wed, 28 Apr 2021 00:49:31 +0200 Subject: [PATCH] Update Wolf tutorial with the OBITools3 --- Wolf-tutorial-with-the-OBITools3.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/Wolf-tutorial-with-the-OBITools3.md b/Wolf-tutorial-with-the-OBITools3.md index 590e94e..356fc2b 100644 --- a/Wolf-tutorial-with-the-OBITools3.md +++ b/Wolf-tutorial-with-the-OBITools3.md @@ -53,6 +53,10 @@ And unzip it: obi alignpairedend -R wolf/reads2 wolf/reads1 - > aligned_reads.fastq +We can check the average alignment score (corresponding approximately to the similarity between the sequences in the overlap): + + obi stats -a score_norm wolf/aligned_reads + ### 3. Remove unaligned sequence records obi grep -a mode:alignment wolf/aligned_reads wolf/good_sequences