From edb392e0d36ca65b3ee62e2474ebb3d9250584b3 Mon Sep 17 00:00:00 2001 From: Celine Mercier Date: Thu, 27 Aug 2020 18:52:43 +0200 Subject: [PATCH] Update Updating and release notes --- Updating-and-release-notes.md | 35 +++++++++++++++++------------------ 1 file changed, 17 insertions(+), 18 deletions(-) diff --git a/Updating-and-release-notes.md b/Updating-and-release-notes.md index 1244e7c..ba4d95c 100644 --- a/Updating-and-release-notes.md +++ b/Updating-and-release-notes.md @@ -2,6 +2,23 @@ You can check the version installed by running `obi --version` +### How to update with pip: + +From the OBITools3 virtual environment, run: + +``` +pip3 install --pre --upgrade OBITools3 +``` + +### How to update with git: + +From the OBITools3 installation directory and virtual environment, run: + +``` +git pull +python3 setup.py install +``` + ### Release notes: * `3.0.0b33`: @@ -91,21 +108,3 @@ dataset if it contains huge dictionaries for a much faster import. * `3.0.0-beta4`: Fixed and improved the options to keep nucleotides around the amplicon in *ecopcr*. * `3.0.0-beta3`: Fixed bugs in *ngsfilter* when cutting sequences, and a few minor bugs. - -### How to update with pip: - -From the OBITools3 virtual environment, run: - -``` -pip3 install --pre --upgrade OBITools3 -``` - - -### How to update with git: - -From the OBITools3 installation directory and virtual environment, run: - -``` -git pull -python3 setup.py install -``` \ No newline at end of file