From 2c9bca5c8a6db0c9bc25aa033099b03afa9977bb Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Wed, 29 Mar 2023 11:16:25 +0700 Subject: [PATCH] realease-notes Former-commit-id: 0f8e6959e3c8dea279b76bf6668b743151a9ada7 --- Release-notes.md | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/Release-notes.md b/Release-notes.md index 8fbaea4..e5090ec 100644 --- a/Release-notes.md +++ b/Release-notes.md @@ -2,15 +2,29 @@ ## Ongoing changes +### Compiler change + +*OBItools4* requires now GO 1.20 to compile. + ### New features + - Add the possibility for looking pattern with indels. This has been added to `obimultiplex` - through the `--with-indels` option. + through the **--with-indels** option. +- Every obitools command has a **--pprof** option making the command publishing a profiling web + site available at the address : [http://localhost:8080/debug/pprof/](http://localhost:8080/debug/pprof/) +- A new `obiconsensus` command has been added. It is a prototype. It aims to build a consensus sequence + from a set of reads. The consensus is estimated for all the sequences contained in the input file. + If several input files, or a directory name are provided the result contains a consensus per file. + The id of the sequence is the name of the input file depleted of its directory name and of all its + extensions. ### Enhancement - Add support for IUPAC DNA code into the DNA sequence LCS computation and an end free gap mode. - This impact `obitag` and `obimultiplex` in the `--with-indels` mode. + This impact `obitag` and `obimultiplex` in the **--with-indels** mode. - Print the synopsis of the command when an error is done by the user at typing the command +- Reduced the memory copy and allocation during the sequence creation. + ### Corrected bugs @@ -18,9 +32,11 @@ - Patch a bug leading with some programs to crash because of : "*empty batch pushed on the channel*" - Patch a bug when directory names are used as input data name preventing the system to actually analyze the collected files. -- Make the `--help` or `-h` options working when mandatory options are declared +- Make the **--help** or **-h** options working when mandatory options are declared - In `obimultiplex` correct a bug leading to a wrong report of the count of reverse mismatch for sequences in reverse direction. +- In `obimultiplex` correct a bug when not enough space exist between the extremities of the sequence + and the primer matches to fit the sample identification tag ## March 7th, 2023. Release 4.0.1