From 62e5a93492de6fd077f5b2b2f696b2ea23109d23 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric@coissac.eu>
Date: Tue, 11 Mar 2025 17:14:40 +0100
Subject: [PATCH] update the compress option name

---
 Release-notes.md                   |  8 ++++++++
 pkg/obidefault/compressed.go       | 10 +++++-----
 pkg/obioptions/version.go          |  2 +-
 pkg/obitools/obiconvert/options.go |  2 +-
 4 files changed, 15 insertions(+), 7 deletions(-)

diff --git a/Release-notes.md b/Release-notes.md
index 2ff8161..7bdf7f5 100644
--- a/Release-notes.md
+++ b/Release-notes.md
@@ -10,6 +10,14 @@
 
 - Options **--fasta** or **--fastq** usable to specify input format were ignored.
   They are now correctly considered
+
+- The `obiannotate` command were crashing when a selection option was used but
+  no editing option.
+  
+- The `--fail-on-taxonomy` led to an error on merged taxa even when the
+  `--update-taxid` option was used.
+
+- The `--compressed` option was not correctly named. It was renamed to `--compress`
   
 ### Enhancement
 
diff --git a/pkg/obidefault/compressed.go b/pkg/obidefault/compressed.go
index 76c398f..1136cd9 100644
--- a/pkg/obidefault/compressed.go
+++ b/pkg/obidefault/compressed.go
@@ -1,15 +1,15 @@
 package obidefault
 
-var __compressed__ = false
+var __compress__ = false
 
 func CompressOutput() bool {
-	return __compressed__
+	return __compress__
 }
 
 func SetCompressOutput(b bool) {
-	__compressed__ = b
+	__compress__ = b
 }
 
-func CompressedPtr() *bool {
-	return &__compressed__
+func CompressOutputPtr() *bool {
+	return &__compress__
 }
diff --git a/pkg/obioptions/version.go b/pkg/obioptions/version.go
index a549e7a..d23f1c8 100644
--- a/pkg/obioptions/version.go
+++ b/pkg/obioptions/version.go
@@ -8,7 +8,7 @@ import (
 // corresponds to the last commit, and not the one when the file will be
 // commited
 
-var _Commit = "3b5d4ba"
+var _Commit = "f21f51a"
 var _Version = "Release 4.4.0"
 
 // Version returns the version of the obitools package.
diff --git a/pkg/obitools/obiconvert/options.go b/pkg/obitools/obiconvert/options.go
index 0d9efed..7b4fc28 100644
--- a/pkg/obitools/obiconvert/options.go
+++ b/pkg/obitools/obiconvert/options.go
@@ -80,7 +80,7 @@ func OutputModeOptionSet(options *getoptions.GetOpt, compressed bool) {
 		options.Description("Disable the progress bar printing"))
 
 	if compressed {
-		options.BoolVar(obidefault.CompressedPtr(), "compressed", obidefault.CompressOutput(),
+		options.BoolVar(obidefault.CompressOutputPtr(), "compress", obidefault.CompressOutput(),
 			options.Alias("Z"),
 			options.Description("Compress all the result using gzip"))