From 757448cb1e3d85ee65e6932405ce94034c935ac0 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Wed, 15 Jan 2025 20:48:34 +0100 Subject: [PATCH] debug obigrep taxonomy options --- pkg/obioptions/version.go | 2 +- pkg/obitools/obigrep/options.go | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/pkg/obioptions/version.go b/pkg/obioptions/version.go index 8f472af..64c5820 100644 --- a/pkg/obioptions/version.go +++ b/pkg/obioptions/version.go @@ -8,7 +8,7 @@ import ( // corresponds to the last commit, and not the one when the file will be // commited -var _Commit = "d066bb6" +var _Commit = "4ae3336" var _Version = "Release 4.2.0" // Version returns the version of the obitools package. diff --git a/pkg/obitools/obigrep/options.go b/pkg/obitools/obigrep/options.go index 48ce998..8197905 100644 --- a/pkg/obitools/obigrep/options.go +++ b/pkg/obitools/obigrep/options.go @@ -6,7 +6,6 @@ import ( log "github.com/sirupsen/logrus" "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiapat" - "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions" "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq" "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax" "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert" @@ -48,7 +47,6 @@ var _pattern_indel = false var _pattern_only_forward = false func TaxonomySelectionOptionSet(options *getoptions.GetOpt) { - obioptions.LoadTaxonomyOptionSet(options, false, false) options.StringSliceVar(&_BelongTaxa, "restrict-to-taxon", 1, 1, options.Alias("r"), @@ -67,6 +65,8 @@ func TaxonomySelectionOptionSet(options *getoptions.GetOpt) { } func SequenceSelectionOptionSet(options *getoptions.GetOpt) { + TaxonomySelectionOptionSet(options) + options.StringVar(&_IdList, "id-list", _IdList, options.ArgName("FILENAME"), options.Description(" points to a text file containing the list of sequence record identifiers to be selected."+