From bb0282b6a1a35b62793101fa0eed6ccf70b0416f Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Tue, 7 Mar 2023 11:13:25 +0700 Subject: [PATCH] Progress on the development Former-commit-id: a8aa6fd60480d4453838d6846a08c84dd5a2f1d9 --- Release-notes.md | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/Release-notes.md b/Release-notes.md index 472a320..0b976f8 100644 --- a/Release-notes.md +++ b/Release-notes.md @@ -6,6 +6,13 @@ - Makes progress bar updating at most 10 times per second. - Makes the command exiting on error if undefined options are used. + +### Enhancement + +- *OBITools* are automatically processing all the sequences files contained in a directory and its sub-directory + recursively if its name is provided as input. To process easily Genbank files, the corresponding filename + extensions have been added. Today the following extensions are recognized as sequence files : `.fasta`, `.fastq`, + `.seq`, `.gb`, `.dat`, and `.ecopcr`. The corresponding gziped version are also recognized (e.g. `.fasta.gz`) ### New features @@ -33,6 +40,10 @@ - Some OBITools (now `obigrep` and `obiconvert`) are capable of using paired read files. Options have been added for this (**--paired-with** _FILENAME_, and **--paired-mode** _forward|reverse|and|andnot|xor_). This, in combination with the **--out** option shown above, ensures that the two matched files remain consistent when processed. + - Adding of the function `ifelse` to the expression language for computing conditionnal values. + - Adding two function to the expression language related to sequence conposition : `composition` and `gcskew`. + Both are taking a sequence as single argument. + ## February 18th, 2023. Release 4.0.0 It is the first version of the *OBITools* version 4. I decided to tag then following two weeks