From bb63a424e9d0eb3a7cf597fb346a8026462252e7 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Fri, 14 Jan 2022 14:59:33 +0100 Subject: [PATCH] Remove an old test file out of interest --- cmd/test/test_test.go | 58 ------------------------------------------- 1 file changed, 58 deletions(-) delete mode 100644 cmd/test/test_test.go diff --git a/cmd/test/test_test.go b/cmd/test/test_test.go deleted file mode 100644 index c076ee8..0000000 --- a/cmd/test/test_test.go +++ /dev/null @@ -1,58 +0,0 @@ -package main_test - -import ( - "fmt" - "testing" - - "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiannot" - "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats" - "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq" -) - -func TestParseOBIFasta(t *testing.T) { - f := "/Users/coissac/travail/Adeline/Soumission_data/Zonation/euka03/euka03.ecotag.fasta.gz" - - var nseq, nread int - nseq = 0 - nread = 0 - - fs := obiformats.ReaderFromIlluminaFile(f) - - fmt.Println(f) - - for i := range obiannot.ExtractHeaderChannel(fs, fastseq.ParseOBIHeader) { - for _, s := range i { - nseq++ - nread += s.Count() - } - } - fmt.Println(nseq, nread) - -} - -func ExtractHeaderChannel(fs fastseq.IFastSeq, sequence func(sequence obiseq.Sequence)) { - panic("unimplemented") -} - -// Performance test of an ADEXP message parsing -func BenchmarkParseOBIFasta(t *testing.B) { - - f := "/Users/coissac/travail/Adeline/Soumission_data/Zonation/euka03/euka03.ecotag.fasta.gz" - - var nseq, nread int - nseq = 0 - nread = 0 - - fs := fastseq.ReaderFromIlluminaFile(f) - - fmt.Println(f) - - for i := range obiannot.ExtractHeaderChannel(fs, fastseq.ParseOBIHeader) { - for _, s := range i { - nseq++ - nread += s.Count() - } - } - fmt.Println(nseq, nread) - -}