From e29dacc1baf8a44f098c09a8d0996993e71d1792 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Wed, 7 Jun 2023 17:47:06 +0200 Subject: [PATCH] change default of output options and add the actual printing of the column sequence Former-commit-id: bc3adf7ddecca3683def980ffc8a8bd63410ab3a --- pkg/obitools/obicsv/obicsv.go | 1 + pkg/obitools/obicsv/options.go | 6 +++--- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/pkg/obitools/obicsv/obicsv.go b/pkg/obitools/obicsv/obicsv.go index 0e66565..3cb7aa5 100644 --- a/pkg/obitools/obicsv/obicsv.go +++ b/pkg/obitools/obicsv/obicsv.go @@ -36,6 +36,7 @@ func CLIWriteCSV(iterator obiiter.IBioSequence, obiformats.CSVTaxon(CLIPrintTaxon()), obiformats.CSVDefinition(CLIPrintDefinition()), obiformats.CSVKeys(CLIToBeKeptAttributes()), + obiformats.CSVSequence(CLIPrintSequence()), ) var err error diff --git a/pkg/obitools/obicsv/options.go b/pkg/obitools/obicsv/options.go index 19c62e1..598398e 100644 --- a/pkg/obitools/obicsv/options.go +++ b/pkg/obitools/obicsv/options.go @@ -6,11 +6,11 @@ import ( "github.com/DavidGamba/go-getoptions" ) -var _outputIds = true +var _outputIds = false var _outputCount = false var _outputTaxon = false -var _outputSequence = true -var _outputQuality = true +var _outputSequence = false +var _outputQuality = false var _outputDefinition = false var _obipairing = false var _autoColumns = false