From ffd67252c3d6aa0ffb7c049b7ac9d8a5abe6ee59 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Thu, 23 Jan 2025 13:50:24 +0100 Subject: [PATCH] patch a bug in obimultiplex: change option -t into -s --- cmd/obitools/obicount/main.go | 2 +- pkg/obioptions/version.go | 2 +- pkg/obitools/obimultiplex/options.go | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/cmd/obitools/obicount/main.go b/cmd/obitools/obicount/main.go index 82c55e7..2a6838f 100644 --- a/cmd/obitools/obicount/main.go +++ b/cmd/obitools/obicount/main.go @@ -39,7 +39,7 @@ func main() { nvariant, nread, nsymbol := fs.Count(true) - fmt.Print("entites,n\n") + fmt.Print("entities,n\n") if obicount.CLIIsPrintingVariantCount() { fmt.Printf("variants,%d\n", nvariant) diff --git a/pkg/obioptions/version.go b/pkg/obioptions/version.go index 64c5820..45175d7 100644 --- a/pkg/obioptions/version.go +++ b/pkg/obioptions/version.go @@ -8,7 +8,7 @@ import ( // corresponds to the last commit, and not the one when the file will be // commited -var _Commit = "4ae3336" +var _Commit = "757448c" var _Version = "Release 4.2.0" // Version returns the version of the obitools package. diff --git a/pkg/obitools/obimultiplex/options.go b/pkg/obitools/obimultiplex/options.go index d0ee643..b88c8ae 100644 --- a/pkg/obitools/obimultiplex/options.go +++ b/pkg/obitools/obimultiplex/options.go @@ -30,7 +30,7 @@ var _ConservedError = false // produced by the func MultiplexOptionSet(options *getoptions.GetOpt) { options.StringVar(&_NGSFilterFile, "tag-list", _NGSFilterFile, - options.Alias("t"), + options.Alias("s"), options.Description("File name of the NGSFilter file describing PCRs.")) options.BoolVar(&_ConservedError, "keep-errors", _ConservedError,