package main import ( "fmt" "os" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obicount" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions" ) func main() { // f, err := os.Create("cpu.pprof") // if err != nil { // log.Fatal(err) // } // pprof.StartCPUProfile(f) // defer pprof.StopCPUProfile() // ftrace, err := os.Create("cpu.trace") // if err != nil { // log.Fatal(err) // } // trace.Start(ftrace) // defer trace.Stop() optionParser := obioptions.GenerateOptionParser( obiconvert.InputOptionSet, obicount.OptionSet, ) _, args, _ := optionParser(os.Args) fs, _ := obiconvert.ReadBioSequencesBatch(args...) nread, nvariant, nsymbol := fs.Count(true) if obicount.CLIIsPrintingVariantCount() { fmt.Printf(" %d", nvariant) } if obicount.CLIIsPrintingReadCount() { fmt.Printf(" %d", nread) } if obicount.CLIIsPrintingSymbolCount() { fmt.Printf(" %d", nsymbol) } fmt.Printf("\n") }