From 2e432e83818ba261ab9d3a44a94692b8c88d6d05 Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Wed, 27 Mar 2019 17:09:01 +0100
Subject: [PATCH] Cleaner installation

---
 Makefile              | 10 +++++++++-
 mtcompare_sumaclust.c |  8 ++++----
 sumaclust.c           | 16 ++++++++--------
 sumalibs              |  2 +-
 4 files changed, 22 insertions(+), 14 deletions(-)

diff --git a/Makefile b/Makefile
index 6560bcb..d2c579d 100644
--- a/Makefile
+++ b/Makefile
@@ -1,3 +1,7 @@
+PREFIX=/usr/local
+
+CFLAGS=-I$(PREFIX)/include
+
 EXEC = sumaclust
 
 SUMACLUST_SRC = sumaclust.c \
@@ -41,4 +45,8 @@ clean:
 	rm -f $(SUMACLUST_OBJ)	
 	rm -f $(EXEC)
 	$(MAKE) -C ./sumalibs clean
-			
+
+install: all
+	install -d $(DESTDIR)$(PREFIX)/bin/
+	install -m 755 $(EXEC) $(DESTDIR)$(PREFIX)/bin/
+
diff --git a/mtcompare_sumaclust.c b/mtcompare_sumaclust.c
index da9e5ab..a5bcb44 100644
--- a/mtcompare_sumaclust.c
+++ b/mtcompare_sumaclust.c
@@ -15,10 +15,10 @@
 #include <math.h>
 #include <sys/time.h>
 
-#include "./sumalibs/libfasta/sequence.h"
-#include "./sumalibs/libutils/utilities.h"
-#include "./sumalibs/liblcs/upperband.h"
-#include "./sumalibs/liblcs/sse_banded_LCS_alignment.h"
+#include "libfasta/sequence.h"
+#include "libutils/utilities.h"
+#include "liblcs/upperband.h"
+#include "liblcs/sse_banded_LCS_alignment.h"
 
 #include "sumaclust.h"
 
diff --git a/sumaclust.c b/sumaclust.c
index c5e9d7c..cd36f3e 100644
--- a/sumaclust.c
+++ b/sumaclust.c
@@ -12,18 +12,18 @@
 #include <math.h>
 #include <sys/time.h>
 
-#include "./sumalibs/libutils/utilities.h"
-#include "./sumalibs/libfasta/sequence.h"
-#include "./sumalibs/libfasta/fasta_header_parser.h"
-#include "./sumalibs/libfasta/fasta_header_handler.h"
-#include "./sumalibs/libfasta/fasta_seq_writer.h"
-#include "./sumalibs/liblcs/upperband.h"
-#include "./sumalibs/liblcs/sse_banded_LCS_alignment.h"
+#include "libutils/utilities.h"
+#include "libfasta/sequence.h"
+#include "libfasta/fasta_header_parser.h"
+#include "libfasta/fasta_header_handler.h"
+#include "libfasta/fasta_seq_writer.h"
+#include "liblcs/upperband.h"
+#include "liblcs/sse_banded_LCS_alignment.h"
 
 #include "mtcompare_sumaclust.h"
 #include "sumaclust.h"
 
-#define VERSION "1.0.32"
+#define VERSION "1.0.33"
 
 
 /* ----------------------------------------------- */
diff --git a/sumalibs b/sumalibs
index ed56cb1..b11748e 160000
--- a/sumalibs
+++ b/sumalibs
@@ -1 +1 @@
-Subproject commit ed56cb1d6b1e60a297cd0d1c67a4e17e4c59d202
+Subproject commit b11748eac8b2ff68388d44bcba577323cebe5b08