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Input can now be stdin

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Celine Mercier
2016-02-22 15:56:46 +01:00
parent 9ed2385fd6
commit fcb9dbcf86
3 changed files with 7 additions and 10 deletions
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sumaclust_user_manual.md
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@ -46,12 +46,12 @@ Sumaclust clusters sequences using the same clustering algorithm as UCLUST and C
#### Input
Input file must be in FASTA format.
The input can be either the standard input (stdin), or a file in FASTA format.
#### Usage
```
sumaclust [-l|L|a|n|r|d|e|o|g|f] [-t threshold_value] [-s sorting_key] [-R maximum_ratio] [-p number_of_threads] [-B file_name_for_BIOM-formatted_output] [-O file_name_for_OTU_table-formatted_output] [-F file_name_for_FASTA-formatted_output] dataset
sumaclust [-l|L|a|n|r|d|e|o|g|f] [-t threshold_value] [-s sorting_key] [-R maximum_ratio] [-p number_of_threads] [-B file_name_for_BIOM-formatted_output] [-O file_name_for_OTU_table-formatted_output] [-F file_name_for_FASTA-formatted_output] [dataset]
```
Argument: the sequence dataset to cluster.