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Fixed bug with the parser and n's

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This commit is contained in:
Celine Mercier
2016-02-22 16:46:13 +01:00
parent d44eca19ce
commit 52e94bbea7
2 changed files with 27 additions and 27 deletions
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50
libfasta/fasta_header_parser.c
View File

@ -406,9 +406,9 @@ static yyconst flex_int32_t yy_ec[256] =
4, 5, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 6, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 6,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
@ -427,41 +427,41 @@ static yyconst flex_int32_t yy_ec[256] =
1, 1, 1, 1, 1
} ;
static yyconst flex_int32_t yy_meta[7] =
static yyconst flex_int32_t yy_meta[6] =
{ 0,
1, 2, 3, 3, 4, 4
1, 2, 3, 3, 4
} ;
static yyconst flex_int16_t yy_base[35] =
static yyconst flex_int16_t yy_base[36] =
{ 0,
0, 0, 23, 22, 6, 0, 12, 0, 26, 0,
0, 4, 23, 0, 9, 0, 14, 0, 27, 0,
0, 29, 29, 0, 0, 29, 29, 0, 0, 29,
29, 0, 0, 0, 0, 0, 0, 29, 18, 23,
23, 21, 21, 18
29, 0, 0, 0, 0, 0, 0, 29, 19, 23,
23, 7, 5, 3, 1
} ;
static yyconst flex_int16_t yy_def[35] =
static yyconst flex_int16_t yy_def[36] =
{ 0,
28, 1, 1, 1, 28, 5, 28, 7, 28, 29,
30, 28, 28, 31, 32, 28, 28, 33, 34, 28,
28, 29, 30, 31, 32, 33, 34, 0, 28, 28,
29, 29, 2, 3, 28, 5, 28, 7, 28, 30,
31, 28, 28, 32, 33, 28, 28, 34, 35, 28,
28, 30, 31, 32, 33, 34, 35, 0, 28, 28,
28, 28, 28, 28, 28
} ;
static yyconst flex_int16_t yy_nxt[35] =
{ 0,
28, 11, 27, 26, 12, 11, 25, 24, 12, 14,
15, 16, 17, 13, 18, 19, 20, 21, 13, 10,
10, 10, 10, 22, 23, 22, 28, 13, 9, 28,
28, 28, 28, 28
} ;
static yyconst flex_int16_t yy_nxt[36] =
static yyconst flex_int16_t yy_chk[35] =
{ 0,
10, 11, 10, 10, 12, 13, 14, 15, 16, 17,
13, 13, 18, 19, 20, 21, 13, 13, 22, 27,
22, 26, 25, 24, 23, 28, 13, 13, 9, 28,
28, 28, 28, 28, 28
} ;
static yyconst flex_int16_t yy_chk[36] =
{ 0,
1, 1, 1, 1, 1, 1, 5, 5, 5, 5,
5, 5, 7, 7, 7, 7, 7, 7, 29, 34,
29, 33, 32, 31, 30, 9, 4, 3, 28, 28,
28, 28, 28, 28, 28
0, 1, 35, 34, 1, 2, 33, 32, 2, 5,
5, 5, 5, 5, 7, 7, 7, 7, 7, 29,
29, 29, 29, 30, 31, 30, 9, 3, 28, 28,
28, 28, 28, 28
} ;
static yy_state_type yy_last_accepting_state;

4
libfasta/fasta_header_parser.l
View File

@ -21,8 +21,8 @@
%}
WORD [^>\\n[:blank:]=;]+
WORDID [^>\\n[:blank:]]+
WORD [^>[:blank:]=;]+
WORDID [^>[:blank:]]+
SUP >
EOL \n
SEP ;