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Temporarily switching back to older bugless fasta libs while fixing a

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bug
This commit is contained in:
Celine Mercier
2017-10-15 20:41:55 +02:00
parent f9d0ac00aa
commit 6373bc1c20
36 changed files with 84 additions and 83 deletions
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41
libfasta/fasta_header_handler.c Normal file → Executable file
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@ -69,34 +69,15 @@ char* fastaSeqPtr_header_add_field(fastaSeqPtr seq, char* name, char* value)
element_from_header* table_header_add_field(element_from_header* header, char* name, char* value)
{
int nbf;
int i, j;
element_from_header* new_header;
nbf = atoi(header[0].value);
new_header = (element_from_header*) realloc(header, ((nbf+1)*sizeof(element_from_header)));
i=0;
while ((strcmp(new_header[i].name, "definition") != 0) && (i < nbf))
i++;
if (strcmp(new_header[i].name, "definition") == 0)
{
j = nbf-1;
while (strcmp(new_header[j].name, "definition") == 0)
{
new_header[j+1].name = new_header[j].name;
new_header[j+1].value = new_header[j].value;
j--;
}
}
new_header[i].name = (char*) malloc((1+strlen(name))*sizeof(char));
strcpy(new_header[i].name, name);
new_header[i].value = (char*) malloc((1+strlen(value))*sizeof(char));
strcpy(new_header[i].value, value);
sprintf(new_header[0].value, "%d", nbf+1);
return(new_header);
nbf++;
header = (element_from_header*) realloc(header, (nbf+1)*sizeof(element_from_header));
header[nbf].name = (char*) malloc((1+strlen(name))*sizeof(char));
strcpy(header[nbf].name, name);
header[nbf].value = (char*) malloc((1+strlen(value))*sizeof(char));
strcpy(header[nbf].value, value);
sprintf(header[0].value, "%d", nbf);
return(header);
}
@ -105,7 +86,7 @@ void free_header_table(element_from_header* header)
int i;
int nbf = atoi(header[0].value);
for (i = 0; i < nbf; i++)
for (i = 0; i <= nbf; i++)
{
free((header[i]).name);
free((header[i]).value);
@ -120,7 +101,7 @@ char* getItemFromHeader(char* name, element_from_header* header)
int nbf;
int i;
nbf = atoi(header[0].value);
for (i = 1; i < nbf; i++)
for (i = 1; i <= nbf; i++)
{
if (strcmp(header[i].name,name)==0)
value = header[i].value;
@ -134,7 +115,7 @@ void changeValue(element_from_header* header, char* name, char* newValue)
int i;
int nbf = atoi(header[0].value);
for (i = 1; i < nbf; i++)
for (i = 1; i <= nbf; i++)
{
if (strcmp(header[i].name, name)==0)
{