Now compiling in one single library

Makefile

@@ -0,0 +1,46 @@
+
+SOURCES = libfasta/fasta_header_parser.c \
+		  libfasta/fasta_seq_writer.c \
+		  libfasta/fasta_header_handler.c \
+		  libfasta/header_mem_handler.c \
+          libfasta/sequence.c \
+          libfile/fileHandling.c \
+          liblcs/sse_banded_LCS_alignment.c \
+		  liblcs/upperband.c \
+		  libutils/utilities.c \
+          libutils/debug.c  
+                   
+SRCS=$(SOURCES)
+         
+OBJECTS= $(patsubst %.c,%.o,$(SOURCES))
+
+LIBFILE = libsuma.a
+
+RANLIB = ranlib
+
+CC=gcc
+
+LDFLAGS=
+
+CFLAGS = -O3 -w
+
+default: all
+
+all: $(LIBFILE)
+
+%.o: %.c
+	$(CC) $(CFLAGS) -c -o $@ $< $(LIB)
+
+libfasta/fasta_header_parser.c: libfasta/fasta_header_parser.l
+	flex -Pheader_yy -t $< > $@
+
+libfasta/dic_parser.c: libfasta/dic_parser.l
+	lex -Phashtable_yy -t $< > $@
+
+clean:
+	rm -rf $(OBJECTS) $(LIBFILE)
+
+$(LIBFILE): $(OBJECTS)
+	ar -cr $@ $?
+	$(RANLIB) $@
+