19 lines
826 B
C
Executable File
19 lines
826 B
C
Executable File
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#ifndef UPPERBAND_H_
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#define UPPERBAND_H_
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int buildTable(const char *sequence, unsigned char *table, int *count);
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int compareTable(unsigned char *t1, int over1, unsigned char* t2, int over2);
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int threshold4(int wordcount,double identity);
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int thresholdLCS4(int32_t reflen,int32_t lcs);
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int hashDB(fastaSeqCount);
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BOOL isPossible(fastaSeqPtr, fastaSeqPtr, BOOL, int, double, BOOL);
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BOOL isPossibleSumathings(fastaSeqPtr seq1, fastaSeqPtr seq2, int l1, int l2, double threshold, BOOL normalize, int reference, BOOL lcsmode);
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void filters(fastaSeqPtr seq1, fastaSeqPtr seq2, double threshold, BOOL normalize, int reference, BOOL lcsmode, double* score, int* LCSmin);
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void filtersSumatra(fastaSeqPtr seq1, fastaSeqPtr seq2, double threshold, BOOL normalize, int reference, BOOL lcsmode, double* score, int* LCSmin);
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#endif
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