sumatra version 1.0.02

global.mk

@@ -0,0 +1,45 @@
+
+LIBFASTAPATH = -L../sumalibs/libfasta
+LIBLCSPATH   = -L../sumalibs/liblcs
+LIBFILEPATH  = -L../sumalibs/libfile
+LIBUTILSPATH = -L../sumalibs/libutils
+
+LIBFASTA = ../sumalibs/libfasta/libfasta.a
+LIBLCS   = ../sumalibs/liblcs/liblcs.a
+LIBFILE  = ../sumalibs/libfile/libfile.a
+LIBUTILS = ../sumalibs/libutils/libutils.a
+
+CC=gcc
+LDFLAGS=
+
+
+ifeq ($(CC),gcc)
+        CFLAGS = -O3 -s -DOMP_SUPPORT -fopenmp -w
+else
+        CFLAGS = -O3 -w
+endif
+
+
+default: all
+
+%.o: %.c
+	$(CC) $(CFLAGS) -c -o $@ $< $(LIB)
+
+
+########
+#
+# libraries compilation
+#
+########
+
+../sumalibs/libfasta/libfasta.a:
+	$(MAKE) -C ../sumalibs/libfasta
+
+../sumalibs/liblcs/liblcs.a:
+	$(MAKE) -C ../sumalibs/liblcs
+
+../sumalibs/libfile/libfile.a:
+	$(MAKE) -C ../sumalibs/libfile
+
+../sumalibs/libutils/libutils.a:
+	$(MAKE) -C ../sumalibs/libutils