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Input can now be stdin if there is only one dataset to compare with

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itself.
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Celine Mercier
2016-02-22 15:38:31 +01:00
parent 580902e0c3
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sumatra_user_manual.md
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@ -40,12 +40,12 @@ Sumatra computes the pairwise alignment scores from one dataset or between two d
#### Input
Files must be in FASTA format.
If there is one dataset, the input can be either the standard input (stdin), or a file in FASTA format. If there are two datasets to compare, the input must be two files in FASTA format.
#### Usage
```
sumatra [-l|L|a|n|r|d|g|x] [-t threshold_value] [-p number of threads] dataset1 [dataset2]
sumatra [-l|L|a|n|r|d|g|x] [-t threshold_value] [-p number of threads] [dataset1] [dataset2]
```
First argument: the sequence dataset in fasta format to analyse.