From 7f6d3a8afaa8e8b255062000448a9deff8615a4f Mon Sep 17 00:00:00 2001
From: Celine Mercier <celine.mercier@metabarcoding.org>
Date: Thu, 16 Jul 2015 14:26:29 +0200
Subject: [PATCH] correcting paths for sumalibs submodule

---
 mtcompare_sumatra.c | 10 +++++-----
 sumatra.c           |  8 ++++----
 sumatra.h           |  4 ++--
 3 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/mtcompare_sumatra.c b/mtcompare_sumatra.c
index 63a8a7a..2e56f6a 100644
--- a/mtcompare_sumatra.c
+++ b/mtcompare_sumatra.c
@@ -1,7 +1,7 @@
 /*
  * mtcompare.c
  *
- *  Created on: 17 aožt 2010
+ *  Created on: 17 ao�t 2010
  *      Authors: Eric Coissac, Celine Mercier
  */
 
@@ -10,10 +10,10 @@
 #include <stdio.h>
 #include <string.h>
 #include "sumatra.h"
-#include "../sumalibs/libfasta/sequence.h"
-#include "../sumalibs/libutils/utilities.h"
-#include "../sumalibs/liblcs/upperband.h"
-#include "../sumalibs/liblcs/sse_banded_LCS_alignment.h"
+#include "./sumalibs/libfasta/sequence.h"
+#include "./sumalibs/libutils/utilities.h"
+#include "./sumalibs/liblcs/upperband.h"
+#include "./sumalibs/liblcs/sse_banded_LCS_alignment.h"
 
 
 typedef struct {
diff --git a/sumatra.c b/sumatra.c
index 4fbffe2..34e4c11 100644
--- a/sumatra.c
+++ b/sumatra.c
@@ -14,10 +14,10 @@
 
 #include <sys/time.h>
 
-#include "../sumalibs/libfasta/sequence.h"
-#include "../sumalibs/liblcs/upperband.h"
-#include "../sumalibs/liblcs/sse_banded_LCS_alignment.h"
-#include "../sumalibs/libutils/utilities.h"
+#include "./sumalibs/libfasta/sequence.h"
+#include "./sumalibs/liblcs/upperband.h"
+#include "./sumalibs/liblcs/sse_banded_LCS_alignment.h"
+#include "./sumalibs/libutils/utilities.h"
 #include "mtcompare_sumatra.h"
 
 #define VERSION "1.0.02"
diff --git a/sumatra.h b/sumatra.h
index cc95197..d5d6904 100644
--- a/sumatra.h
+++ b/sumatra.h
@@ -1,14 +1,14 @@
 /*
  * sumatra.h
  *
- *  Created on: 8 aožt 2010
+ *  Created on: 8 ao�t 2010
  *      Author: coissac
  */
 
 #ifndef SUMATRA_H_
 #define SUMATRA_H_
 
-#include "../sumalibs/libfasta/sequence.h"
+#include "./sumalibs/libfasta/sequence.h"
 
 void printResults(fastaSeqPtr seq1, fastaSeqPtr seq2, double score, BOOL extradata, int64_t pairs, BOOL print);